Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00994 ATGGTAACAATAGTATTTGCATCGGATGAATACTTTTCTACATCCCTACCCGGTTGCAATAGCACCTGTGGAAATGTCACAATTCCATATCCATTTGGTATATCAAATTCATCAATACCAAATCATCGAACTTGTTTCATAGATCCCAATTTTGAACTCACATGTGAAAATGACACATTAGTAATGGGCAATATACCAATTTTGAACATAAGCATCCTCGAAGGACAAATTGAAATGAAGACTCGTGTTTCAAGTTATTGTAATAGCACAAATCATAGTCAAGCCGATTTGACTATAGATCGCGACGGATTCAGCGTTTCAAGCTCCGAAAACAAGTTCATATCTGTTGGTTGTGATACTTTCGGTTATATTGAGAGCATCTACAACGATGAGAAATATACAACGGGTTGCGTAACAATATGTAACGGTAACCGAGCTAATATTGAAAACGGAACATGTTCGGGTATCGGTTGTTGTCAAGTTGATATTCCACATATGATGAAGAATATAAGTAGACATGTTCTGGAACTTACTAATTCTACGGAATCTGGATGTAGTTATTCTTTTATTGTTAAAGATGGATCCTATACATTTTCAGTTTCTGATTTGGATGATTTTCCTTATGAAAGACTTCCATTGATTGTTGATTGGAGTGTTGGAAATAAAAGTTGTAAGGCTTCAATGGTTAAAGATGATTATGCTTGCAAGAAAAATAGTGTTTGTTATGATAAGGACATTGATAATGGTTACCAGTGTAAATGTAAGGATGGTTATGAAGGAAACCCATATCATCCAGATGGCTGCAAAGACAAGGATGAATGTAAGACAAATAACACATGCATAACTAAAGAGAATTGTCACAATTTGGAAGGGGGTTATCAATGTATTTGTCCAGATAGGCAACCAGAAAATGCAACATTTGCAGGAGGGTGTAAAGATCATAGACAATTAGATCTTGTTACCAAGATTTTGATTGGAACAAGTGCTGTACTCATTGTCCTATTTGTGGCAATTTCATCTCTATATTTGACATACCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGAGGTTCTATTTTGCTACAACAATTATCTACCGGAGAAGACTCATCGCAATCGGCTCATATATTCACGGAAGAGGAACTTAAAAAAGCCACCAAAAACTACGATGAAAGCTTAATCATTGGTAGAGGAGGTTTTGGCACAGTCTTCAAAGGAATTTTACCCGACAACAAGATCGTTGCTGTAAAAAAATCCAAAATAATAGACGCAAGTCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATAAATCATAGGAACGTCGTAAAACTCTTAGGATGTTGTTTAGAAACAGAAGTTCCTTCCTTGGTTTACGAATTCGTTAGCCACGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTGAAACAAGATAAAATATTTGAAGCTATTCAAGTTGGAATTTTGAATGATGATAACAAGAAGGACATTAAGGAGGTTGCTATTCTTGCAGCAAGGTGTTTGAGACTTAGAGGTGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATAAGGTTAACGGATAGGCATCCTTGGACTGATACAGAACAAAATTTTGAGGAAAATCAACGCTTACTTCATGAGGCATCTTCTAGCATTTATAATGAAATTGGTGATGATAGCTCGAATTTTGGATACACTACTGTGTATGATAGCTTGAAAGATCAACCATTGATTGCCTTGGATGATGGAAGATGA 1848 0.3598 MVTIVFASDEYFSTSLPGCNSTCGNVTIPYPFGISNSSIPNHRTCFIDPNFELTCENDTLVMGNIPILNISILEGQIEMKTRVSSYCNSTNHSQADLTIDRDGFSVSSSENKFISVGCDTFGYIESIYNDEKYTTGCVTICNGNRANIENGTCSGIGCCQVDIPHMMKNISRHVLELTNSTESGCSYSFIVKDGSYTFSVSDLDDFPYERLPLIVDWSVGNKSCKASMVKDDYACKKNSVCYDKDIDNGYQCKCKDGYEGNPYHPDGCKDKDECKTNNTCITKENCHNLEGGYQCICPDRQPENATFAGGCKDHRQLDLVTKILIGTSAVLIVLFVAISSLYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTGEDSSQSAHIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKIIDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSHELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGILNDDNKKDIKEVAILAARCLRLRGDERPSMKEVAMELEGIRLTDRHPWTDTEQNFEENQRLLHEASSSIYNEIGDDSSNFGYTTVYDSLKDQPLIALDDGR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00994 615 Gene3D Transferase(Phosphotransferase) domain 1 470 579 - -
Trre1g00994 615 ProSitePatterns Calcium-binding EGF-like domain signature. 270 295 IPR018097 GO:0005509
Trre1g00994 615 Pfam Calcium-binding EGF domain 270 299 IPR001881 GO:0005509
Trre1g00994 615 Gene3D Phosphorylase Kinase; domain 1 362 469 - -
Trre1g00994 615 FunFam Wall-associated receptor kinase 2 365 470 - -
Trre1g00994 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 473 564 IPR045274 GO:0007166
Trre1g00994 615 ProSiteProfiles Protein kinase domain profile. 395 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00994 615 SUPERFAMILY EGF/Laminin 270 299 - -
Trre1g00994 615 Pfam Wall-associated receptor kinase galacturonan-binding 19 77 IPR025287 GO:0030247
Trre1g00994 615 SUPERFAMILY Protein kinase-like (PK-like) 375 476 IPR011009 -
Trre1g00994 615 SMART egfca_6 224 269 IPR001881 GO:0005509
Trre1g00994 615 SMART egfca_6 270 312 IPR001881 GO:0005509
Trre1g00994 615 CDD EGF_CA 270 299 - -
Trre1g00994 615 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Trre1g00994 615 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 286 297 IPR000152 -
Trre1g00994 615 Pfam Wall-associated kinase 151 255 IPR013695 GO:0004674|GO:0016020
Trre1g00994 615 Pfam Protein tyrosine and serine/threonine kinase 401 475 IPR001245 GO:0004672|GO:0006468
Trre1g00994 615 Gene3D Laminin 222 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00994 Trre-Chr1 7492082 7495376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00994 467 615 Receptor kinase-like Gene Family AT1G21230 39.474 5.27e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00994 WAK 0.0001 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00994 - - gsj:114381577 559.681