Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00993 ATGAAACAGAACACAGAGCTCACAAAACTATGCCAAATTTTGATAGTAACAATATCAATATCAATATCAATGGTAACAATAGTATTTGCATCGGATGAATACTTTTCTACATCCCTACCCGGTTGCAATAGCACCTGTGGAAATGTCACAATTCCATATCCATTTGGTATATCAAATTCATCAATACCAAATCATCGAACTTGTTTCATAGATCCCAATTTTGAACTCACATGTGAAAATGACACATTAGTAATGGGCAATATACCAATTTTGAACATAAGCATCCTCGAAGGACAAATTGAAATGAAGACTCGTGTTTCAAGTTATTGTAATAGCACAAATCATAGTCAAGCCGATTTGACTATAGATCGCGACGGATTCAGCGTTTCAAGCTCCGAAAACAAGTTCATATCTGTTGGTTGTGATACTTTCGGTTATATTGAGAGCATCTACAACGATGAGAAATATACAACGGGTTGCGTAACAATATGTAACGGTAACCGAGCTAATATTGAAAACGGAACATGTTCGGGTATCGGTTGTTGTCAAGTTGATATTCCACATATGATGAAGAATATAAGTAGACATGTTCTGGAACTTACTAATTCTACGGAATCTGGATGTAGTTATTCTTTTATTGTTAAAGATGGATCCTATACATTTTCAGTTTCTGATTTGGATGATTTTCCTTATGAAAGACTTCCATTGATTGTTGATTGGAGTGTTGGAAATAAAAGTTGTAAGGCTTCAATGGTTAAAGATGATTATGCTTGCAAGAAAAATAGTGTTTGTTATGATAAGGACATTGATAATGGTTACCAGTGTAAATGTAAGGATGGTTATGAAGGAAACCCATATCATCCAGATGGCTGCAAAGACAAGGATGAATGTAAGACAAATAACACATGCATAACTAAAGAGAATTGTCACAATTTGGAAGGGGGTTATCAATGTATTTGTCCAGATAGGCAACCAGAAAATGCAACATTTGCAGGAGGGTGTAAAGATCATAGACAATTAGATCTTGTTACCAAGATTTTGATTGGAACAAGTGCTGTACTCATTGTCCTATTTGTGGCAATTTCATCTCTATATTTGACATACCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTTCAACAAAATGGAGGTTCTATTTTGCTACAACAATTATCTACCGGAGAAGACTCATCGCAATCGGCTCATATATTCACGGAAGAGGAACTTAAAAAAGCCACCAAAAACTACGATGAAAGCTTAATCATTGGTAGAGGAGGTTTTGGCACAGTCTTCAAAGGAATTTTACCCGACAACAAGATCGTTGCTGTAAAAAAATCCAAAATAATAGACGCAAGTCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATAAATCATAGGAACGTCGTAAAACTCTTAGGATGTTGTTTAGAAACAGAAGTTCCTTCCTTGGTTTACGAATTCGTTAGCCACGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTGAAACAAGATAAAATATTTGAAGCTATTCAAGTTGGAATTTTGAATGATGATAACAAGAAGGACATTAAGGAGGTTGCTATTCTTGCAGCAAGGTGTTTGAGACTTAGAGGTGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATAAGGTTAACGGATAGGCATCCTTGGACTGATACAGAACAAAATTTTGAGGAAAATCAACGCTTACTTCATGAGGCATCTTCTAGCATTTATAATGAAATTGGTGATGATAGCTCGAATTTTGGATACACTACTGTGTATGATAGCTTGAAAGATCAACCATTGATTGCCTTGGATGATGGAAGATGA 1917 0.3573 MKQNTELTKLCQILIVTISISISMVTIVFASDEYFSTSLPGCNSTCGNVTIPYPFGISNSSIPNHRTCFIDPNFELTCENDTLVMGNIPILNISILEGQIEMKTRVSSYCNSTNHSQADLTIDRDGFSVSSSENKFISVGCDTFGYIESIYNDEKYTTGCVTICNGNRANIENGTCSGIGCCQVDIPHMMKNISRHVLELTNSTESGCSYSFIVKDGSYTFSVSDLDDFPYERLPLIVDWSVGNKSCKASMVKDDYACKKNSVCYDKDIDNGYQCKCKDGYEGNPYHPDGCKDKDECKTNNTCITKENCHNLEGGYQCICPDRQPENATFAGGCKDHRQLDLVTKILIGTSAVLIVLFVAISSLYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTGEDSSQSAHIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKIIDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSHELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGILNDDNKKDIKEVAILAARCLRLRGDERPSMKEVAMELEGIRLTDRHPWTDTEQNFEENQRLLHEASSSIYNEIGDDSSNFGYTTVYDSLKDQPLIALDDGR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00993 638 Pfam Protein kinase domain 420 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00993 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 496 587 IPR045274 GO:0007166
Trre1g00993 638 Gene3D Phosphorylase Kinase; domain 1 386 492 - -
Trre1g00993 638 Gene3D Laminin 245 329 - -
Trre1g00993 638 FunFam Wall-associated receptor kinase 2 388 493 - -
Trre1g00993 638 SUPERFAMILY EGF/Laminin 293 322 - -
Trre1g00993 638 ProSitePatterns Calcium-binding EGF-like domain signature. 293 318 IPR018097 GO:0005509
Trre1g00993 638 Gene3D Transferase(Phosphotransferase) domain 1 493 602 - -
Trre1g00993 638 CDD EGF_CA 293 322 - -
Trre1g00993 638 Pfam Wall-associated receptor kinase galacturonan-binding 42 100 IPR025287 GO:0030247
Trre1g00993 638 ProSiteProfiles Protein kinase domain profile. 418 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00993 638 Pfam Wall-associated kinase 174 278 IPR013695 GO:0004674|GO:0016020
Trre1g00993 638 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Trre1g00993 638 SUPERFAMILY Protein kinase-like (PK-like) 398 499 IPR011009 -
Trre1g00993 638 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Trre1g00993 638 SMART egfca_6 247 292 IPR001881 GO:0005509
Trre1g00993 638 SMART egfca_6 293 335 IPR001881 GO:0005509
Trre1g00993 638 Pfam Calcium-binding EGF domain 293 322 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00993 Trre-Chr1 7492082 7495445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00993 490 638 Receptor kinase-like Gene Family AT1G21230 39.474 6.27e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00993 WAK 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00993 - - gmx:106795446 559.681