Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00992 ATGACTAGAGGTTTCAAAGACATGTTGGGCGAAGGAGGTTTTGGTACTGTTTTCAAGGGGAACCTACGTAGCGGTCCTTGCGTTGCAATCAAGATGTTGGGTAAGTCAAAAGGTAATAGGCAAGACTTCGTTAGTGAAGTCACAACAATTGGAAGAATACATCATTTGAATGTAGTGCAATTATTTGGATTTTGTATCGAGGGATCAAAACGAGCTCTAGCTTGTTTACGAATTCATGCCAAATGGATCTCTTGA 255 0.4039 MTRGFKDMLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNRQDFVSEVTTIGRIHHLNVVQLFGFCIEGSKRALACLRIHAKWIS 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00992 84 SUPERFAMILY Protein kinase-like (PK-like) 6 70 IPR011009 -
Trre1g00992 84 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Trre1g00992 84 ProSiteProfiles Protein kinase domain profile. 3 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00992 84 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trre1g00992 84 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 73 IPR045874 GO:0004672
Trre1g00992 84 Pfam Protein tyrosine and serine/threonine kinase 6 70 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00992 Trre-Chr1 7490492 7490746 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00992 1 73 Receptor kinase-like Gene Family AT1G66980 53.425 7.33e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00992 PK_Tyr_Ser-Thr 1.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00992 - - tpra:123893257 135.191