Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00990 ATGACTAGAGGTTTCAAAGACATGTTGGGCGAAGGAGGTTTTGGTACTGTTTTCAAGGGGAACCTACGTAGCGGTCCTTGCGTTGCAATCAAGATGTTGGGTAAGTCAAAAGGTAATAGGCAAGACTTCCTTGTTTACGAATTCATGCCAAATGGATCTCTTGATAAATTTATTTTCCCTAAAGAAGGGAGTATAAATTTAAGTTATACAAGAATTCATAATATTGCAATTGGTGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAAATTTTGCATTTTGATATTAAGCCCCACAATATCCTGCTTGACGAGAATTTTATTCCAAAGATATTTGACTTTGGACTTGCAAAGTTATCTCCGATAGAGAATAGCATTGTCACGATGACCGCATCAAAAGGAACAATTGGATATATGGCTCCGGAATTGTTCTACAAAAATATTGGAGGCGTGTCATATAAGGCTGACGTTTATAGTTTTGGGATGCTTTTGATGGAAATGGCAAGCAAGAGGAGAAACTTAAATTCCCATGCAGATCATTCAAGCCAGGTTTATTTTCCCTTTTGGATTTATGGTCAATTTGGAAATGGGGGAGAAATAGAACTTGGAGATATCACAGAGGACGATATGAAAATAGTAAAGAAGATGATCATTGTCGCTCTTTGGTGCATACAAATTAACCCAAATAATCGTCCCTCGATGAGTAAAGTAGTGGAGATGCTTGAAGGAGATATTGAAAGCCTTGAAATGCCTCCAGAGCCAACCATGTATCCGGATGAAGTGATTTCTGTGGATGAAACAACCAATTTAGACCGAACAATATCAAGCGATTTCATTAGTTCGAGTGATTCTAGAGAAAACATAACTAAACCTTTAATGGAGAACATTCATTGA 903 0.3776 MTRGFKDMLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNRQDFLVYEFMPNGSLDKFIFPKEGSINLSYTRIHNIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKIFDFGLAKLSPIENSIVTMTASKGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRRNLNSHADHSSQVYFPFWIYGQFGNGGEIELGDITEDDMKIVKKMIIVALWCIQINPNNRPSMSKVVEMLEGDIESLEMPPEPTMYPDEVISVDETTNLDRTISSDFISSSDSRENITKPLMENIH 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00990 300 Gene3D Phosphorylase Kinase; domain 1 3 49 - -
Trre1g00990 300 SMART serkin_6 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00990 300 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 44 IPR045874 GO:0004672
Trre1g00990 300 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trre1g00990 300 SUPERFAMILY Protein kinase-like (PK-like) 6 245 IPR011009 -
Trre1g00990 300 Pfam Protein kinase domain 43 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00990 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Trre1g00990 300 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00990 300 Gene3D Transferase(Phosphotransferase) domain 1 50 259 - -
Trre1g00990 300 FunFam PR5-like receptor kinase 49 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00990 Trre-Chr1 7490492 7491485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00990 1 276 Receptor kinase-like Gene Family AT5G38280 45.016 5.57e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00990 Pkinase 4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00990 - - tpra:123893257 474.937