Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00987 ATGAAACAGAACACAAAGCTCACACAATTATGCACAATTTTAATCATTACAATATCCATGGTAACAACAACATTTGCATCAAATGAATCCTTTTCTACATCCCTACCAGGTTGCAAAAACAAATGTGGAAATGTCACAATTCCATATCCTTTTGGTATATCAACTTCATCAATACCAAATCAAGGAAATTGTTTCCTAGAGGAAGAATTTGAACTCAAATGTGAAAATGATATAAAATTACTTTGGGGTGCTGATTTTAATTTCCAAGTTTACAACATAAGCCTCCTTGAAGGACAGATTGAAGTGTCTTTTTATATCTCCAGTTATTGTGATAACGGAACATCGAATCAACCCACTTTAGACACTGGCGGTTTCAGAATATCCAGCAAGGAAAACAAGTTTGTAACGGTTGGTTGTGACAGTTACGGTTATCTCAACAGCGTTTTCAACGAAAAAACATATTCGACCGGTTGCTTAACAAGATGTTATGGTAATCGAGACGGAATTGAAAACGGAACATGTTCGGGCATCGGTTGTTGTCAAGTTGATATTCCACACATGATGAAGAATATAAGTCTAGAAGTTTCTGAATTTCCTAATTCAACGGAATCTGCTGGGTGTAGCTATGCTTTTATTGTTAAAGATGGTTCCTATAAATTTTCTCTTGCTCATTTGGATGGCTTTTCTTCTGAGGAGCTTCCATTGATTCTTGATTGGAGTGTTGGAAGTGAAAATTGTGCGGTTTCAAAGGGTGAACATGATTATGCTTGCAAGAATAATAGTGTTTGTTATGATAAGGACATTGATATTGGTTACCAATGTAAATGTAAGAAAGGTTATGAAGGAAACCCGTATCATCCAGATGGCTGCAAAGACAGTGATGAATGTAAGACAAATAACACATGCATAACTAAAGAGCATTGTCACAACACGGAAGGGAAATATGAATGTCTTTGTCCAGATGGAAAACCAGAAAATGGAATATTTGCAGGAGGCTGTCAAGATCATAGACAACCAGATCTTATTATCAAGATTGCGATTGGATCAAGTAGTGGATTCGCTATTCTACTTTTGGGAATTTCATCTCTATACTTGATATACCAAAAAAGGAAACTCATCAAACTAAAGCAAAAATTCTTCCAACAAAATGGCGGTTTCATTTTGCTACAACAACTATCTACAAGAGAAGACACATCTCAATCAGCTCAAATATTCACAGAAAAGGAACTTAAAAAAGCCACCAACAACTACGACGAAAGTTTAATCATCGGTAGAGGAGGTTTTGGTACAGTTTACAAAGGAATTTTAACAAACAACAAAATTGTCGCTATTAAAAAGTCAAAAATAATAGACGAAAATCAAATTGAACAATTCATAAATGAGGTAGTTGTTCTGTCCCAAATAAATCATAGGAATGTTGTCAAACTCTTAGGATGTTGTTTGGAGACAGAAGTTCCTTCCTTGGTGTATGAATTCGTTAGCAATGGTACGCTTTTTGAATTCATACAAAGTTCTAAAGATAAAACAAATAATTTAACATGGAAAACACGTTTAAGGATAGCTGCTGAGACAGCTGGAGCTTTATCGTATCTACATTCATCTGCATCAATACCAATTATTCATAGAGATGTTAAAAGTACCAACATTCTCTTGGACGACAATTACACCGCAAAAGTTTCCGATTTTGGAGCTTCGAGATTGATTCCACTTGATCAAACCGAGATAGCAACAATGGTACAAGGAACTCTTGGATACTTAGATCCAGAGTATATGCAAACACATCATTTAACTGAGAAAAGTGATGTTTATAGCTTTGGCGTTGTTCTTGCAGAGCTTCTAACAGGGGACAAGCCTATTTATTTTAATAGGTCAGAAGAGAACACTAGTCTTGCTATGCATTTTTTGTCTTGTTTAAAACACGATCGAATTTTCGAAGCTATTCAAATTGGTATTTTGAATGATGAAAACAAGGAAGAGATTAAGGAGGTTGCTATTCTTGCAGCAAGGTGTTTGAGTCTTAGAGGTGAGGAAAGACCTAGTATGAAGGAGGTGGCTATGGAGTTGGATAGTATAAGGTTGGAGAAACATCCTTGGAATGATACAGAACAAAATTTGGAGAGTCAACGCTTACTTCATGAGGCATCTTTTAGCATTTATAATGAGACTGGTGATAATAGCTATAATCTTGAATATGCTACTGGGTATGATAGCTTGAATGATCAACCATTAATTTCCTTGGATGGTGGAAGATGA 2253 0.3564 MKQNTKLTQLCTILIITISMVTTTFASNESFSTSLPGCKNKCGNVTIPYPFGISTSSIPNQGNCFLEEEFELKCENDIKLLWGADFNFQVYNISLLEGQIEVSFYISSYCDNGTSNQPTLDTGGFRISSKENKFVTVGCDSYGYLNSVFNEKTYSTGCLTRCYGNRDGIENGTCSGIGCCQVDIPHMMKNISLEVSEFPNSTESAGCSYAFIVKDGSYKFSLAHLDGFSSEELPLILDWSVGSENCAVSKGEHDYACKNNSVCYDKDIDIGYQCKCKKGYEGNPYHPDGCKDSDECKTNNTCITKEHCHNTEGKYECLCPDGKPENGIFAGGCQDHRQPDLIIKIAIGSSSGFAILLLGISSLYLIYQKRKLIKLKQKFFQQNGGFILLQQLSTREDTSQSAQIFTEKELKKATNNYDESLIIGRGGFGTVYKGILTNNKIVAIKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFEFIQSSKDKTNNLTWKTRLRIAAETAGALSYLHSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLIPLDQTEIATMVQGTLGYLDPEYMQTHHLTEKSDVYSFGVVLAELLTGDKPIYFNRSEENTSLAMHFLSCLKHDRIFEAIQIGILNDENKEEIKEVAILAARCLSLRGEERPSMKEVAMELDSIRLEKHPWNDTEQNLESQRLLHEASFSIYNETGDNSYNLEYATGYDSLNDQPLISLDGGR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00987 750 CDD EGF_CA 292 322 - -
Trre1g00987 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 699 IPR045274 GO:0007166
Trre1g00987 750 FunFam Wall-associated receptor kinase 2 387 492 - -
Trre1g00987 750 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Trre1g00987 750 SUPERFAMILY Protein kinase-like (PK-like) 398 687 IPR011009 -
Trre1g00987 750 Pfam Wall-associated kinase 172 277 IPR013695 GO:0004674|GO:0016020
Trre1g00987 750 SMART serkin_6 417 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00987 750 Gene3D Phosphorylase Kinase; domain 1 387 492 - -
Trre1g00987 750 Pfam Protein kinase domain 419 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00987 750 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Trre1g00987 750 SUPERFAMILY EGF/Laminin 292 323 - -
Trre1g00987 750 SMART egf_5 295 334 IPR000742 -
Trre1g00987 750 SMART egf_5 245 291 IPR000742 -
Trre1g00987 750 ProSiteProfiles Protein kinase domain profile. 417 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00987 750 FunFam Wall-associated receptor kinase 2 493 710 - -
Trre1g00987 750 Gene3D Laminin 243 327 - -
Trre1g00987 750 Gene3D Transferase(Phosphotransferase) domain 1 493 714 - -
Trre1g00987 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Trre1g00987 750 CDD STKc_IRAK 423 691 - -
Trre1g00987 750 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Trre1g00987 750 Pfam Calcium-binding EGF domain 292 322 IPR001881 GO:0005509
Trre1g00987 750 Pfam Wall-associated receptor kinase galacturonan-binding 38 102 IPR025287 GO:0030247
Trre1g00987 750 ProSiteProfiles EGF-like domain profile. 249 291 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00987 Trre-Chr1 7481927 7484931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00987 38 750 Receptor kinase-like Gene Family AT1G21230 45.777 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00987 Pkinase 8.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00987 - - gmx:100781051 885.945