Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00985 ATGGCAGAATCACATTGTTTCAGCATTCTACTGATTCTTCTCCTGCTAATCAATAGCAGCAGCAGTCATGATGATCAATGTGGACCTAACCAACCAACTATTCAATTCCCTTTCCAACTCGCCAAAAAAGATTCACAAGATCAATGTGTTAATCCTGACTTTTGCCTTTATTGTACTGAAAATAAGAAAACCATGTTTTTAGTCCCTGCCCCTTCAGGTCCAATTAAATTTTTTGTCCCCAAAATTGACTATGAATTGAACCTAATATATATCTCAGATCCGGAATGTTGTCTTACAAAAAAGTTACTGAAACTGAAACTTAACGATTCATCCTTTCTACCTTTCCGATTTGATTCAAACCCAGAAAAGAAAGTTTCCTTCTTCAACTGCTCTTCAGTTAGGAAACATCGCCTGAGAAACAATGATCAGACATTCCAAGACGCACAAGATATGACCACCTGTCCAATTTACGCTTCTAATTCCTACGACAGTGTCCTCGACTTAGACCTTGTGTTGTGTACCAAGATGTTTGACGTCAGTTCCTCTATCAAAAATGTAAACGAATTGACGTATAATCGACTCAGTCTGAGTTGGCCCAAACCAAATTGTACTGGGTGTGAGGCGAAAGGCAAGAAATGTAGATGGAACAACAACGGCACGAAAGGTGACATTGAATGTTTTGATTACAACAACAAACGAAAAACAATCCAAATTCCAATATTTGTTATTTTCGCTACTGCAGGTTCAATTATATTGGGGTTGGTCACCATTGTAATTGCTAAGATTTATCTATATTTTAAAGAAAAAGAAGAAGACCAAGTTAGAATTGATAAGTTTTTAGAGGATTATAAAGCACAAAAGCCTGCTAGATTTTCCTATGCTGACATAAGAAGAATCACGAGTGGGTTTAAGGAAAAGTTAGGAGAAGGAGCTCATGGAACCGTGTTTAAAGGTAAACTCTCAAGTGAGATTCTGGTGGCTGTGAAGATACTAAATAATACGCAAGGAGAAGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGTAAAATCCACCATATCAACGTTGTTCGTTTGCTTGGCTTTTGCGCAGATGGAATCCACCGTGCACTTGTATACAATTTGTTTCCAAAAGGTTCGCTACAGAGCTTCATATATCAACCAGATAAAAAGGACCATTTTATGGGGTGGGAGAAGCTGCAACAAATTAGTCTTGGTATAGCAAAAGGAATTGAGTATCTTCATGAGGGTTGTAGTCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACACCTTCACTCCAAAAATTTCAGATTTTGGTCTCGCCAAATTATGTTCCAAGAATCTTAGTGTTGTATCCATGACAGTGGCTAGGGGAACCTTGGGATATATGGCACCTGAAGTTTTGTCCAGAAATTTTGGGAATGTTTCTCTTAAGTCTGATATTTACAGTTATGGGATGTTGTTGCTAGAAATGGTTGGAGGAAGAAAGAATGTAGATTCGTCATCTGCCGAAAATACTCATGTTTTATACCCAGAATGGATCCATAACTTATTGGAAGGGGACATACATATTCATATTGAAGATGAGGATGAAGTTAAAATTGCAAAAAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCAGCCAATGAACCGTCCTTCCATAAAAACTGTCATACAAATGTTGGAAACAGGAGACTACAACCAGTTAACTTTGCCACCTAATCCTTTTCATTCCACCACTTCCATTACCATTAGTGAAGGCTCTTTGGCAAGACGACCTTTCCAAATGGAAGTGATCCAGGAATAA 1833 0.3819 MAESHCFSILLILLLLINSSSSHDDQCGPNQPTIQFPFQLAKKDSQDQCVNPDFCLYCTENKKTMFLVPAPSGPIKFFVPKIDYELNLIYISDPECCLTKKLLKLKLNDSSFLPFRFDSNPEKKVSFFNCSSVRKHRLRNNDQTFQDAQDMTTCPIYASNSYDSVLDLDLVLCTKMFDVSSSIKNVNELTYNRLSLSWPKPNCTGCEAKGKKCRWNNNGTKGDIECFDYNNKRKTIQIPIFVIFATAGSIILGLVTIVIAKIYLYFKEKEEDQVRIDKFLEDYKAQKPARFSYADIRRITSGFKEKLGEGAHGTVFKGKLSSEILVAVKILNNTQGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFPKGSLQSFIYQPDKKDHFMGWEKLQQISLGIAKGIEYLHEGCSHPILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNLSVVSMTVARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDSSSAENTHVLYPEWIHNLLEGDIHIHIEDEDEVKIAKKLAIVGLWCIQWQPMNRPSIKTVIQMLETGDYNQLTLPPNPFHSTTSITISEGSLARRPFQMEVIQE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00985 610 Gene3D Phosphorylase Kinase; domain 1 275 375 - -
Trre1g00985 610 Gene3D Transferase(Phosphotransferase) domain 1 376 579 - -
Trre1g00985 610 FunFam PR5-like receptor kinase 376 581 - -
Trre1g00985 610 Pfam Protein kinase domain 304 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00985 610 SUPERFAMILY Protein kinase-like (PK-like) 285 571 IPR011009 -
Trre1g00985 610 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Trre1g00985 610 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Trre1g00985 610 PANTHER RUST RESISTANCE KINASE LR10-RELATED 273 588 IPR045874 GO:0004672
Trre1g00985 610 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00985 610 FunFam serine/threonine-protein kinase PBS1-like 268 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00985 Trre-Chr1 7468517 7470349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00985 7 584 Receptor kinase-like Gene Family AT5G38260 33.549 6.50e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00985 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00985 - - gmx:100811907 784.637