Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00977 ATGACCGAAGCACATACTACTACTATGATCACATTACTGCTTCTTCTACTGCTTATCAACAGTGGAAGCAGTCACGAGGAGTGCAGAACCGCTACTGAACCATTGTCTTGTGGACCTAACGAACCGCTTATTAGTTTTCCCTTCCAACTCGTTAAGGAATCATCACAGGATCTATGTGTTCGTCCGGAATTTTGCCTATATTGTACTCAAAATAACAAAACCATGATTTTGCTCTCTACCACTACAGGTCTAATTAACTTCATTGTCTATAGAATTGTCTACGAAGAATACTTTATTTCAATTTCTGATCCAGAGAATTGCCTCCCGAATAAGTTTTTAAAACTTAATAATTCATCATTTTTACCATACCAGTTTTATTCACCGTTCCAAACAACACTTTCCTTCTTCAATTGCTCTTCATCTAGGAAACGATACTTGAGAAACAGAGAACAGACGTATTTCAATTCACAAGATATAAGCACGTGTCCAATTTACGCTTCTAATTCCCAAGAGAGTGTCCTCACATTGGACCTTGTATCGTGTACAAAGATGTTCGATGTTGAAATGTCCACCGTGGGAGATGAATTGTCATCTAATCAAATGAGTTTGAGTTGGCCCAAAACATATTGTACAGAGTGTGAAGCGAAAGGCATGAAATGCAAATGGAAGAACAATGGCACGGAAGGCGAAACTGAATGTTTTGATTGCAACAATAAACGGAAAACAATTCAAATTCCAAATTCTCTTATATACGCTTCTACAGGTTCAATTTTTTCGGGGCTGGTTCTCATCGCATTATTTAAGATACATCTCTATTTTAGAAAGAAAGAAGAGGATCAAATTAGAGTTGATAAATTTTTAGAGGATTATAAAGCACAAAAGCCTGCTAGATTTTCATATGCTGATATAAAAAGAATCACGAGTGGGTTTAAGGAAAAGCTTGGAGAAGGAGCTCACGGAACTGTGTACAAAGGAAAGCTCTCAAGTGAGATACTTGTGGCTGTGAAAATGCTCAACAATACCGCGGGAGAAGGAAAAGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATTCACCACATCAACGTTGTTCGCTTGCTTGGTTTTTGTGCAGATGGTATCCACCGTGCTCTTGTTTACAATTTTTTTCCAAATGGTTCACTACAAAGTTTCATATTCCCACCCGATAACAAAGACCATTTCATGGGGTGGGAGAAGCTACAACAAATCGGTATTGGTATAGCCGAAGGAATTGAGTATCTTCATCAGGGTTGTAACCATCCAATCATTCACTTCGACATCAACCCTCACAATGTTTTGTTAGATTGCTCCTTTGCTCCAAAAATTTCAGATTTCGGTCTTGCCAAATTATGTTCCAAGAATCTTAGTTTTGTGTCCATGACGGCTGCTAAGGGTACCTTGGGATACATGGCGCCCGAAGTTCTATCAAGAAATTTTGGGAGTGTGTCTCTTAAGTCGGATATTTATAGTTACGGAATGTTGTTGCTAGAAATGGTTGGAGGGAGAAAGAATGTAGACATGTTATCTGCAGAAGCATTTCATGTGTTATATCCAAAATGGATCCATAACTTATTAGAAGGAGATGTACATATTCATATTGAGGATGAAGGTGATGTTAAAATTGCAAAGAAACTTGCAATTGTTGGACTTTGGTGCATTCAATGGCAACCAATAAACCGTCCATCGATAAAAACTGTTGTGCAAATGTTGAAAACCGGAGAGGATATTCAGTTAATGGTGCCTCCTAATCCTTTTGGCTCGATGACGACAATGACCAATAATGATCAATGCACTTTGGCAAGAACAACTTTCCAAATGGAAGTGATTCATGAATAA 1857 0.3818 MTEAHTTTMITLLLLLLLINSGSSHEECRTATEPLSCGPNEPLISFPFQLVKESSQDLCVRPEFCLYCTQNNKTMILLSTTTGLINFIVYRIVYEEYFISISDPENCLPNKFLKLNNSSFLPYQFYSPFQTTLSFFNCSSSRKRYLRNREQTYFNSQDISTCPIYASNSQESVLTLDLVSCTKMFDVEMSTVGDELSSNQMSLSWPKTYCTECEAKGMKCKWKNNGTEGETECFDCNNKRKTIQIPNSLIYASTGSIFSGLVLIALFKIHLYFRKKEEDQIRVDKFLEDYKAQKPARFSYADIKRITSGFKEKLGEGAHGTVYKGKLSSEILVAVKMLNNTAGEGKEFINEVGIMGKIHHINVVRLLGFCADGIHRALVYNFFPNGSLQSFIFPPDNKDHFMGWEKLQQIGIGIAEGIEYLHQGCNHPIIHFDINPHNVLLDCSFAPKISDFGLAKLCSKNLSFVSMTAAKGTLGYMAPEVLSRNFGSVSLKSDIYSYGMLLLEMVGGRKNVDMLSAEAFHVLYPKWIHNLLEGDVHIHIEDEGDVKIAKKLAIVGLWCIQWQPINRPSIKTVVQMLKTGEDIQLMVPPNPFGSMTTMTNNDQCTLARTTFQMEVIHE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00977 618 FunFam PR5-like receptor kinase 383 589 - -
Trre1g00977 618 ProSiteProfiles Protein kinase domain profile. 308 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00977 618 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Trre1g00977 618 Pfam Wall-associated receptor kinase galacturonan-binding 36 103 IPR025287 GO:0030247
Trre1g00977 618 Gene3D Phosphorylase Kinase; domain 1 282 382 - -
Trre1g00977 618 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
Trre1g00977 618 Pfam Protein tyrosine and serine/threonine kinase 310 577 IPR001245 GO:0004672|GO:0006468
Trre1g00977 618 FunFam S-receptor-like serine/threonine-protein kinase 276 382 - -
Trre1g00977 618 Gene3D Transferase(Phosphotransferase) domain 1 383 586 - -
Trre1g00977 618 PANTHER RUST RESISTANCE KINASE LR10-RELATED 280 597 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00977 Trre-Chr1 7427060 7428996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00977 273 600 Receptor kinase-like Gene Family AT1G66980 46.588 5.61e-91 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00977 PK_Tyr_Ser-Thr 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00977 - - gmx:102662104 815.453