Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00975 ATGGCATTGGTAGGAGCAACTAGCATGATCACCCTGCTGCTTCTACTACTGCTTTTCCATCACGGCAGCAGTCATGACAAATGCAGAGAAATGTCTTGTGGACCTGACGAACCGATTGTTCAATTTCCCTTCCAACTCGTTAAGGAATCGTCACAAGATCGATGTGTTTATCCTGAGTTTTGCCTATATTGTACTCCAAACAAGAACACCATGATGGTACTATCTACTACTTCAGGTCCAATCAAATTCCTTGTCTATGGCATAGACTATGAATCGAACCGAATGACAATCTCAGACCCAGATAATTGCATTCCCAAAAAGTTTTTGAAACTTATGAATTCATCGTTTCTACCTTACCGATTTTATACAGATTCAATAACAAAACTTTCTATCTTCAATTGCTCTTCGGTTAAGTATCGACACCTGAGAAATGAGGATCAATCATCCCTAATGTCACAAGACATGACCACCTGTCCAATTTACATTTCTAATTCGGACGACAGTGTGGTTGCATTGGACCTTGTATCGTGTACAAAGATGTTCGATGTGTCAATCATATCCATGCAACAATATTGCCCGCCTTATAATTTGCTCAGTTTGATTTGGCCCAAACAAAATTGTACAGAGTGCGAAGCAAAAGGAATGAAATGCAAATGGAAAAACAACGGCACAAAAGGTGAAACTCAATGTTTTGATTGTAAGAACAAATGGAAAACAATTCAAATTCCAAAATCTCTTTTATACATCTCTGCAGGTTCAATTCTTATGGGTCTGGTTCTCATTGCATTATTTAAGATACATATATATTTTAGAAAGAAAGAAGAGGATCAAGTTAGAGTTGATAAGTTCTTAGAGGATTATAGAGCACAAAAGCCTACTAGATTTTCCTATGCTGACATAAAAAGAATTACGAATGGATTTAAGGAAAAACTTGGAGAAGGAGCTCACGGAACTGTGTTCAAAGGAAAGCTTTCAAGTGAGATACTCGTGGCTGTGAAAATGCTCAACAATACAGCGGGAGAAGGAAAAGAGTTCATCAATGAAGTGAAAATTATGGGAAAAATTCACCATATCAATGTTGTTCGCTTGCTTGGTTTCTGTGCCGATGGAATCCACCGTGCTCTTGTCTACAATTTGTTTCCAAATGGTTCGCTACAAAGTTTTATATTTCCACCCGATAACAAAGACAATTTCATTGGATGGGCGAAGCTGCAACAAATTGGCATTGGTATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTGTAACAATCCAATCATTCACTTTGACATCAACCCTCATAATGTTTTGCTAGATGACTCCTTCACTCCAAAAATCTCAGATTTCGGTCTCGCCAAATTATGTACAAAGAATCTTAGTGTTGTTTCCATGACGGTTGCTAAGGGAACCTTGGGATACATGGCGCCTGAAGTACTATCAAGAAATTTTGGAAATGTGTCTCTCAAGTCAGATATTTACAGTTACGGAATGTTGTTGCTTGAAATGGTTGGAGGGAGAAAGAATGTAGACATGTTGTCGTCTGCAGAAGCTTGTAATGTGTTATATCCAGAATGGATCCATAACTTATTGGAAGGAGATGTACATATTCATATTGAGGATGAAAATGATGTTAAAATTGCAAAGAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCTACCAATGAACCGTCCGTCGATAAAAAATGTTGTGCAAATGTTGGAAACCAGAGAGGATATCCTGTTAACTGTGCCTCCTAATCCTTTTCGCTCGACATCTTCCACGACCGCTAATGATGAATGCACTTTGGCAAGAAGAAGTTTCCAAATGGAAGTCATTCAAGAATAA 1851 0.382 MALVGATSMITLLLLLLLFHHGSSHDKCREMSCGPDEPIVQFPFQLVKESSQDRCVYPEFCLYCTPNKNTMMVLSTTSGPIKFLVYGIDYESNRMTISDPDNCIPKKFLKLMNSSFLPYRFYTDSITKLSIFNCSSVKYRHLRNEDQSSLMSQDMTTCPIYISNSDDSVVALDLVSCTKMFDVSIISMQQYCPPYNLLSLIWPKQNCTECEAKGMKCKWKNNGTKGETQCFDCKNKWKTIQIPKSLLYISAGSILMGLVLIALFKIHIYFRKKEEDQVRVDKFLEDYRAQKPTRFSYADIKRITNGFKEKLGEGAHGTVFKGKLSSEILVAVKMLNNTAGEGKEFINEVKIMGKIHHINVVRLLGFCADGIHRALVYNLFPNGSLQSFIFPPDNKDNFIGWAKLQQIGIGIAKGIEYLHQGCNNPIIHFDINPHNVLLDDSFTPKISDFGLAKLCTKNLSVVSMTVAKGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDMLSSAEACNVLYPEWIHNLLEGDVHIHIEDENDVKIAKKLAIVGLWCIQWLPMNRPSIKNVVQMLETREDILLTVPPNPFRSTSSTTANDECTLARRSFQMEVIQE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00975 616 ProSiteProfiles Protein kinase domain profile. 305 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00975 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 594 IPR045874 GO:0004672
Trre1g00975 616 SUPERFAMILY Protein kinase-like (PK-like) 288 577 IPR011009 -
Trre1g00975 616 FunFam serine/threonine-protein kinase PBS1-like 272 379 - -
Trre1g00975 616 Pfam Wall-associated receptor kinase galacturonan-binding 28 99 IPR025287 GO:0030247
Trre1g00975 616 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
Trre1g00975 616 FunFam PR5-like receptor kinase 380 586 - -
Trre1g00975 616 Gene3D Transferase(Phosphotransferase) domain 1 380 583 - -
Trre1g00975 616 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Trre1g00975 616 Pfam Protein tyrosine and serine/threonine kinase 307 574 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00975 Trre-Chr1 7421252 7423186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00975 31 589 Receptor kinase-like Gene Family AT1G66910 33.442 3.93e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00975 PK_Tyr_Ser-Thr 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00975 - - gmx:100811907 826.624