Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00974 ATGTGGTGGATGAGAATGATACTGCTACTACTACTACTATTGCTGCCGTTTACCTGCCGCGCTAGTACTGATGAACATCCATGTCCACCTTCATCTTGTGGCGAAATTTCTAATATAAGTTACCCATTTCGATTAAAATATGGCCCAATTCATTGCGGGGATAGAAGGTATGAACTATCATGTGAAAATAATGTGACAACTTTATATTTATTCTCTTCAAAATATCATGTGAAGTCCATCAATTACAATAACTTCACCATCAGATTGGTTGATTCTGGAATTCAACAAGATAATTGCTCTTCACTTCCTCTCAATTCCTTATCTCAATCTAATTTCTGTGTTAGATACAATTATATCGACAAATATTGCACGGATCCATACCAACCCGTACAAAATAATCGCCAGCTATTTCAGCATATAGTATACTTGAATTGTAGCCATCAAGTTACTAACAATCATAAATATGTCGACACTGTTCCTTGCGTCGATCGAAACTCAAAAGAGTATTATATTTATGCTATGGCTGGTGATTTAATTGCTGATGATTTTCAAGTTGGTTGTCACGTTGAATTAGTGGCTCCTACATCTTCTTGGTTGGGAAATTTGCAAGGAAATGAAATAGTTTCTTATGATGAAATGCACAAGTTGTTGGTGTATGGATTTGAGATTACATGGTTGCGTCATATGTGTCAAAAAAGTTGTGGAGATACAAGTTGGTTGTCCTGTTCATTCAACACTACCACAGAGAAAATTCAATGCGATCACTTCTGCCGCAATATCTTATCGGGAGGTTGGAGTACTCGTTGTGGCCGATGGTCCCAGCTGAGTTATTACGCTAAAGATACTATCATAGCTGTCAGGATAGGATTAATTGAAATGATAAAAGGACCAAACCAAATATATGAAGGTGAAACTGAGTATAAAGTAGGATTGGCAACAGGACACTATGTTATACCATCATTCTTGGCAGGTAGATATCTGTTTGGGATGACATTATTTATTGCCTTGTTGATATACAAATGGAGGAAAAGGCATTTGTCAATGTTTGAATATATTGAAATATATCTACAACAACAAAACAATCTCATGCCCATTGGATATTCATACAAAGAAATCAAGAAAATGGCTAAAGGTTTCAAAGACAAATTGGGTGAAGGAGGGTTTGGCACTGTGTTTAAAGGGAACCTTCGCAGCGGCCCTTGTGTTGCAATCAAGATGTTGGGTAAGTCGAAAGGTAATGGGCAAGACTTTATTAGTGAAGTAGCAACTATCGGAAGGATACATCATTTGAATGTCGTGCAATTAATTGGATTTTGTGTCGAAGGATCAAAACGTGCTCTCATTTATGAATTCATGCCTAATGGATCTCTTGATAAATTCATTTTCTCTAAAGAAGGAAACGTAAATATAAGCTACAACCAAATTTTTGACATATCCATTGGAGTAGCTCGTGGGATTGCTTATCTTCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCTCATAACATCCTTCTTGACGAAAACTTCACCCCAAAAGTGTCTGACTTTGGACTAGCTAAGTTATATCCTATACAGAACAGCATTATCACAATGACTGCGGCAAGAGGTACAATTGGTTATATGGCTCCAGAGTTGTTCTACAAAAATCTTGGAGGAGTGTCCTATAAGGCTGATGTTTATAGCTTTGGTATGCTATTGATGGAGATGGCAGGTAGAAGGAAAAACCTTAATGCCCATGCGGAGCATTCTAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGACGGAGACATAGAAATCGAAGATACCACCGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTCGCACTTTGGTGTATACAATTAAAACCAAATGATCGTCCCACAATGAGCAAAGTAGTGGAAATGCTCGAAGGAGACGTTGAAAGCCTTGAAATACCTCCAAAGCCACTCCTTTATCCACATGAAACAGTTGTAGATGATCAAACAACTAACTTTGACCAAACAACATCGAGCGGTTACACTAGTTCTTATGATTCTTGGGAAATAGTAAATGACTCTCTTATAGAGAATATTGATTGA 2112 0.3712 MWWMRMILLLLLLLLPFTCRASTDEHPCPPSSCGEISNISYPFRLKYGPIHCGDRRYELSCENNVTTLYLFSSKYHVKSINYNNFTIRLVDSGIQQDNCSSLPLNSLSQSNFCVRYNYIDKYCTDPYQPVQNNRQLFQHIVYLNCSHQVTNNHKYVDTVPCVDRNSKEYYIYAMAGDLIADDFQVGCHVELVAPTSSWLGNLQGNEIVSYDEMHKLLVYGFEITWLRHMCQKSCGDTSWLSCSFNTTTEKIQCDHFCRNILSGGWSTRCGRWSQLSYYAKDTIIAVRIGLIEMIKGPNQIYEGETEYKVGLATGHYVIPSFLAGRYLFGMTLFIALLIYKWRKRHLSMFEYIEIYLQQQNNLMPIGYSYKEIKKMAKGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNGQDFISEVATIGRIHHLNVVQLIGFCVEGSKRALIYEFMPNGSLDKFIFSKEGNVNISYNQIFDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPIQNSIITMTAARGTIGYMAPELFYKNLGGVSYKADVYSFGMLLMEMAGRRKNLNAHAEHSSQLYFPLWIYDQVEKDGDIEIEDTTEEEKKIVKKMIIVALWCIQLKPNDRPTMSKVVEMLEGDVESLEIPPKPLLYPHETVVDDQTTNFDQTTSSGYTSSYDSWEIVNDSLIENID 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00974 703 Pfam Protein kinase domain 380 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00974 703 SMART serkin_6 377 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00974 703 PANTHER RUST RESISTANCE KINASE LR10-RELATED 352 669 IPR045874 GO:0004672
Trre1g00974 703 SUPERFAMILY Protein kinase-like (PK-like) 358 648 IPR011009 -
Trre1g00974 703 ProSiteProfiles Protein kinase domain profile. 377 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00974 703 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Trre1g00974 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Trre1g00974 703 Gene3D Transferase(Phosphotransferase) domain 1 452 655 - -
Trre1g00974 703 FunFam PR5-like receptor kinase 452 659 - -
Trre1g00974 703 FunFam serine/threonine-protein kinase PBS1-like 350 451 - -
Trre1g00974 703 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Trre1g00974 703 Gene3D Phosphorylase Kinase; domain 1 355 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00974 Trre-Chr1 7413673 7420861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00974 8 663 Receptor kinase-like Gene Family AT5G38260 34.107 7.67e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00974 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00974 - - tpra:123893257 979.163