Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00973 ATGGCAAGATCACAGAGTACTTTGATCACACTACTTCTTCTTTTGCTTATCAATAGATGCAGCAGTCATGACAAGTGCAGAGAATATTCATCTTGTGGATCTTATCCTCATGTTCGATTTCCCTTCCAACTAGTTAAGGAATCATCACAAGATCAATGTCTTTATCCTGAGTTTTGTCTATATTGTACTCAAAATGGGGAAACCATGTTTTTACTTCCAACTACTACAGGTCCAATTAAATTCATTGTTTATGACATAGACTATGAATCAAACACAATTTCAGTTTCAGACCCGGACTATTGTATTTCGGAAAAGTTTTTCAAGCTTAACACTTCATCATTTCTACCCTACCGAATTTCTTCGGGATACAAAACAAAAATATCTTTTTTCAATTGCTCTTCAATTAGGAAAAGATACCTGAGAAATCATGATATGTATTCCCGACATTCACAAGATATGATCACTTGTCCAATTTACACTTCTGAGACCTCTGACAGTGTTCTTCAATTGGACCTTTTATCATGTACCAAGATGTTTGACGCGTCAATGATGCAACGAGGATTAACAATTAATTCGATTGGTTTGAGTTGGACCAAACAAAATTGTACAGAGTGCCTAGCGAAAGGCATGGAATGCAATTGGAAGACCAACACCACCAAAGGCGAAACTGAATGTTTTGACTGCAACAATAAACGGAAAACAATTCAAATTCCAAAACCTCTTATATACGCCTCTATAGGTTCAATTCTTTTCGGAAGTTTCCGAATGGAAGTCCTTCAAGAATAA 786 0.3613 MARSQSTLITLLLLLLINRCSSHDKCREYSSCGSYPHVRFPFQLVKESSQDQCLYPEFCLYCTQNGETMFLLPTTTGPIKFIVYDIDYESNTISVSDPDYCISEKFFKLNTSSFLPYRISSGYKTKISFFNCSSIRKRYLRNHDMYSRHSQDMITCPIYTSETSDSVLQLDLLSCTKMFDASMMQRGLTINSIGLSWTKQNCTECLAKGMECNWKTNTTKGETECFDCNNKRKTIQIPKPLIYASIGSILFGSFRMEVLQE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00973 261 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 247 IPR046948 -
Trre1g00973 261 Pfam Wall-associated receptor kinase galacturonan-binding 26 97 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00973 Trre-Chr1 7409717 7411631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00973 21 230 C3H Transcription Factor Family AT2G46495 26.522 1.16e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00973 - - mtr:25482287 259.225