Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00971 ATGTGGTGGGTGAGAGTGATTTTATTGGTACTATTGTTGTTACAGCAAGCTAGTAGCAATGCTCTTACTATTGAGCAAGAGCATACATGTCCACCTTCATCTTGTGGAAAAATATCAAAAATAAGCTATCCATTTCGATTAAAAGATGACCCAATTCATTGCGGGGATAAAAGGTACGAACTATCTTGTGAAAATAATGTGACAACATTATATTTATACTCTGCAAAATATTATGTCCAGTACATCAGTTACAATAATTTCACAATCCGATTGGTTGATCCTGGTGTTCATCAAGATAATTGCTCTTCACTTCCTCTCAATTCCTTATCTCAATCTGATTTCTGCGATACTTATGATTACGACAACAAATATTGCACGGATCCATACCAATCATCATCAGGACATTATTATGACAGTGAAAGCCTTGTTTTTGAGCATGTAGTATACTTGAATTGTAGCCATCAAGTGAATAACAATCGTAAATATGTGAATACTACTTCGTGTCTCAATCCGAACTCAAAAGGGTATTATATTTATGCTATGGCTGGTGATTTAATTGCTCAAGATTTTGAAGTTGGTTGTCATGTAAAATTGGTTAGTCTAACATCTTGGTTGAAAAAATTTCAAAGAAATCAACAAGGACTTTTACTTTCCTATGATGTCATTCATAAGGCTTTAGTGTATGGATTTGAGATTTCATGGTTGAATCTTCCTTGTCAGAATCTTTGCGGAGATTCAAAGTTTTGTTCCTTCAACGGTACCATACTTGAATGCTATCGCGCCTGCCATACTTTCTGGGGAGAGCGGAGCTTCGATCTTTGTGGGATATGGCCTCAGCTGAGTTTATATACTAAAGATCTTATCATCGCTATTTGGATAGGAATATTAGAAATGATAAAAGGGCCAAACCAAAGATATGAAGGTTATAGTCAGTATAAAATTATAGGATTACGCACAGGGCACTATGTTCTACCATCATTATTGGCAGCTAGATATCTGTTTGGAATGACATTATTTATTGCCTTGTTGATATACAAATGGAGGAAAAGGCATTTGTCAATGTTTGAATATATTGAAATATATCTACAACAACAAAACAATCTCATGCCCATTGGATATTCATACAAAGAAATCAAGAAAATGGCTAAAGGTTTCAAAGACAAATTGGGTGAAGGAGGGTTTGGCACTGTGTTTAAAGGGAACCTTCGCAGCGGCCCTTGTGTTGCAATCAAGATGTTGGGTAAGTCGAAAGGTAATGGGCAAGACTTTATTAGTGAAGTAGCAACTATCGGAAGAATACATCATTTGAATGTGGTTCAGTTAATTGGATTTTGTGCTGAGGGATCAAAACGTGCTCTTATTTATGAATTCATGCCTAATGGATCTCTTGATAAATTCATTTTCTCTAAAGAAGGAAACGTAAATATAAGCTACAACCAAATTTTTGACATATCCATTGGAGTAGCTCGTGGGATTGCTTATCTTCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAACCTCACAACATCCTTCTTGACGAGAACTTCACCCCAAAAGTCTCTGATTTTGGACTAGCTAAGTTATATCCTGTACAGAATAGCATTATCACAATGACTGCGGCAAGAGGTACAATTGGTTATATGGCTCCAGAGTTGTTCTACAAAAATCTTGGAGGAGTGTCCTATAAGGCTGATGTTTATAGCTTTGGTATGCTATTGATGGAGATGGCAGGTAGAAGGAAAAACCTTAACGCCCATGCGGAGCATTCTAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGACGGAGACATAGAAATTGAAGATACCACTAAGGAGGAAAAGAAAATAGTAAAGAAGATGGTCATAGTCGCACTTTGGTGTATACAACTAAAACCAAATGATCGTCCCACAATGAGCAAAGTAGTGGAAATGCTCGAAGGAGACGTTGAAAGCCTTGAAATACCCCCAAAGCCACTCCTTTATCCACATGAAACAGTTGTAGATGATCAAAGAACTAACTTTGACGAAACAAAATCGAGTGATTACACTAGTTCTTATGATTCTGGGGAAATAGTAAATGATTCTCTTATAGAGAATATTGATTGA 2130 0.3629 MWWVRVILLVLLLLQQASSNALTIEQEHTCPPSSCGKISKISYPFRLKDDPIHCGDKRYELSCENNVTTLYLYSAKYYVQYISYNNFTIRLVDPGVHQDNCSSLPLNSLSQSDFCDTYDYDNKYCTDPYQSSSGHYYDSESLVFEHVVYLNCSHQVNNNRKYVNTTSCLNPNSKGYYIYAMAGDLIAQDFEVGCHVKLVSLTSWLKKFQRNQQGLLLSYDVIHKALVYGFEISWLNLPCQNLCGDSKFCSFNGTILECYRACHTFWGERSFDLCGIWPQLSLYTKDLIIAIWIGILEMIKGPNQRYEGYSQYKIIGLRTGHYVLPSLLAARYLFGMTLFIALLIYKWRKRHLSMFEYIEIYLQQQNNLMPIGYSYKEIKKMAKGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNGQDFISEVATIGRIHHLNVVQLIGFCAEGSKRALIYEFMPNGSLDKFIFSKEGNVNISYNQIFDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPVQNSIITMTAARGTIGYMAPELFYKNLGGVSYKADVYSFGMLLMEMAGRRKNLNAHAEHSSQLYFPLWIYDQVEKDGDIEIEDTTKEEKKIVKKMVIVALWCIQLKPNDRPTMSKVVEMLEGDVESLEIPPKPLLYPHETVVDDQRTNFDETKSSDYTSSYDSGEIVNDSLIENID 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00971 709 FunFam serine/threonine-protein kinase PBS1-like 356 457 - -
Trre1g00971 709 Pfam Protein kinase domain 386 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00971 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 358 676 IPR045874 GO:0004672
Trre1g00971 709 SMART serkin_6 383 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00971 709 ProSiteProfiles Protein kinase domain profile. 383 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00971 709 SUPERFAMILY Protein kinase-like (PK-like) 364 654 IPR011009 -
Trre1g00971 709 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Trre1g00971 709 FunFam PR5-like receptor kinase 458 665 - -
Trre1g00971 709 Gene3D Phosphorylase Kinase; domain 1 361 457 - -
Trre1g00971 709 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Trre1g00971 709 Gene3D Transferase(Phosphotransferase) domain 1 458 661 - -
Trre1g00971 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00971 Trre-Chr1 7402475 7407325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00971 25 687 Receptor kinase-like Gene Family AT5G38260 35.651 1.02e-111 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00971 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00971 - - tpra:123893257 988.408