Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00963 ATGGAATCATTTTTATGTTACCTGCAAATATTTATGGTAATTGTTGTTCTACTACTGCCTCAACATCATCAAATAATATGTGATGCAAGTACTATTACTAATAACCAAACACATTGTCCACCTTCTTCATGCGGCCAAATCACAAACATAAAATATCCGTTTCGACTTAAGGATGATCCAACAACCTGTGGTGATCAGAGGTACGAGTTATCCTGCGAAAACAACATGACAGTGTTAACTCTATTTTCGGGTAAATACTATGTGAAATCAATCAACTACAAAAACTACACAATTCGGTTAGTTGATCCTGGAATTGAAGAAAGGGATTGCGCCTCTATTCCTCGCTATTACTTATACACTTCTAATTTCACAAGTTATTACAAAGACCAGGAGGAACCATATCAAACTACACAGTACAGAATAATTGGTCATAGATATCTTGATTATAGGAACTTACCAATGTTCCAGCACGTAATCTACATGAATTGTAGCAATCCTGTACGAGATGATCCTGTGTACGCGGATACAGCTTCTTGCATCAAGTCGAATTCCCAAGGTGGTCATGTTTACGCCATTGCTGGGGATTTGAAGGTTGGTAACTTAAAAGATGATGACTGCCACGTGGAGGTTGTTACCGCGATATCTTTTTTCAGTTATAAATACTACTCTGATGATCACGGCTCTGGTGGTGATTGGGACATTCCGAATGAAAAGTATTCGTACAGCGAAATTCATAGGATGTTGGTGGGTGGATTTGATGTTTCTTGGATCAGTGCTCCTTGTCAAAATCTCTGTGGAGACCCAGATTGCATTTTAAGTGAAAACACTTGGAGTCTTGGTTGCAACGATCAACAATATAAAACCCTATTAGAATTATTCCTCGATTGTGTTGGAACTCCATCAAAGCTTCCAATGTTCATCAAAGGTATTGTGTACGGCATTGTCAAAGGACTACAACAAGCAATAGGTGTGAGAACAAACGGTGGATTTGAAGGTAGATCAGATGAATCTCAACTTGGTTTTTTCATAGGAAATATCATTGGAACCTTTTTCTTGTCATCATACATTATATTTAGGCTTTTGTTGGGTTTCATAATTTTCACTACAAGTTTGGTACATATATATCGAACAAGGCATACATCAATGTATGAAAATATCGAAGATTTTCTTCAACGTAATTCCCTCATGCCTATAAGGTATTCATACAAAGATATAAAGAAGATGACTAGAGGCTTTAAGGACAAGTTGGGTGAAGGAGGCTTTGGTAAGGTTTATAAGGGAAAGCTACGAAGTGGGCCTTTCGTAGCCATAAAGATGTTGGGGAAACCTAAGGGTATTGCAAATGGACAAGATTTCATTAGTGAAGTTGCAACCATAGGAAGAATACATCACACCAACGTGGTGCGACTTGTTGGATTTTGTGTTGAGGGATCAAAACGTGCTCTTATTTATGATTTCATGTCCAATGGCTCTCTTGACAGATATATTTCCTCTACAAAAGATCACATTTCCTTAACATATAAGCAAATGTACGAGATATCTCTTGCAGTGGCTCGTGGGATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCCCATAACATACTTCTTGACAAGGACTTCATCGCCAAAGTTTCAGACTTCGGTCTTGCAAAACTTTATCCTGTTGACAATAGCATTGTAACTTTGACTGCTGCAAGAGGAACGATTGGTTATATGGCTCCAGAATTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAAGCTGATGTGTATAGTTTTGGAATGCTCTTAATGGAAATTGCAAACAGGAGAAGAAATTTGAACTCAAATGCAGATAAGTCAAGTCAAATTTTCTTTCCCTATTGGATTTACAATGAATTGATCGAAGAAAGGGAGATAGAAATATTAGGTGAAGCTACCGACGAAGAAAAGAAAAATGTGAAAAAAATGTTCATAATTGCTCTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCAATGGACAAAGTAATAGAAATGCTCGAAGGAGATACCGATGACATTGTAATTCCTCCAAAACCTTCTCCATATCCAACTGAAATTATTCAAGATAATACAGTTATTAGCTCAAGTGAATCTATATCAGATGATGATGTCACCGGCTCAAGTAGTTTTCTTGAGGAAACTATAGTAGATCCTTTAAGTTAG 2214 0.3704 MESFLCYLQIFMVIVVLLLPQHHQIICDASTITNNQTHCPPSSCGQITNIKYPFRLKDDPTTCGDQRYELSCENNMTVLTLFSGKYYVKSINYKNYTIRLVDPGIEERDCASIPRYYLYTSNFTSYYKDQEEPYQTTQYRIIGHRYLDYRNLPMFQHVIYMNCSNPVRDDPVYADTASCIKSNSQGGHVYAIAGDLKVGNLKDDDCHVEVVTAISFFSYKYYSDDHGSGGDWDIPNEKYSYSEIHRMLVGGFDVSWISAPCQNLCGDPDCILSENTWSLGCNDQQYKTLLELFLDCVGTPSKLPMFIKGIVYGIVKGLQQAIGVRTNGGFEGRSDESQLGFFIGNIIGTFFLSSYIIFRLLLGFIIFTTSLVHIYRTRHTSMYENIEDFLQRNSLMPIRYSYKDIKKMTRGFKDKLGEGGFGKVYKGKLRSGPFVAIKMLGKPKGIANGQDFISEVATIGRIHHTNVVRLVGFCVEGSKRALIYDFMSNGSLDRYISSTKDHISLTYKQMYEISLAVARGIAYLHQGCDMQILHFDIKPHNILLDKDFIAKVSDFGLAKLYPVDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRRRNLNSNADKSSQIFFPYWIYNELIEEREIEILGEATDEEKKNVKKMFIIALWCIQLNPNDRPSMDKVIEMLEGDTDDIVIPPKPSPYPTEIIQDNTVISSSESISDDDVTGSSSFLEETIVDPLS 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00963 737 ProSiteProfiles Protein kinase domain profile. 410 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00963 737 FunFam PR5-like receptor kinase 487 695 - -
Trre1g00963 737 PIRSF SRK 324 733 IPR024171 GO:0004674
Trre1g00963 737 PIRSF SRK 20 113 IPR024171 GO:0004674
Trre1g00963 737 Gene3D Transferase(Phosphotransferase) domain 1 487 691 - -
Trre1g00963 737 Gene3D Phosphorylase Kinase; domain 1 385 486 - -
Trre1g00963 737 Pfam Protein kinase domain 413 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00963 737 PANTHER RUST RESISTANCE KINASE LR10-RELATED 383 703 IPR045874 GO:0004672
Trre1g00963 737 FunFam serine/threonine-protein kinase PBS1-like 378 486 - -
Trre1g00963 737 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Trre1g00963 737 SMART serkin_6 410 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00963 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Trre1g00963 737 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Trre1g00963 737 SUPERFAMILY Protein kinase-like (PK-like) 394 684 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00963 Trre-Chr1 7344707 7347624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00963 374 696 Receptor kinase-like Gene Family AT4G18250 47.130 2.38e-97 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00963 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00963 - - mtr:25482268 1051.97