Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00962 ATGTCACTTACAATATTAGCACTGCTGCTGCTAGTGCTAATAAACCTTGTAAATGGTCAAAGCAATAATAACTCGTCCGATGAATGCCCCTTTCGTCTATCTTGTTCGCGTAACAAGAATCAAACTATTGAGTTTCCAGCAATTCCAGTATCAGTAAAACTCGTCGTTACAGACGTAGATTGTCAATCTCAACAATTATACATTTCTCACCCACGAAACTGTCTTTCTAGTATCTTTTTAACGAACAATTATTCGTTATTTTATCCTTTCTATAGTTCATACTATTTTCAAGACGATCCCTTTAGCGACTACAACTTTACTTTCTTTAATTGCTCTTCAGTTGGACAACACCGTCTCAGAAACTTTGAACAAACAAGGCCCGGAGCGCAAGATATGTTATCTTGCCCGATTTATGTCACTTATTCCGAAGAAAGTGTTATTGAGTTGGACTTATTCCCCTGCACCAGAATGTTTGACAAAGTTTTGCCAATAGATTATATTTCTGATATAAGGGAAAACCATCTCAGATTGAATTGGTCGGAAAAAACTTTTCATAGTCAGTGTTTACAATATGAAAAACACAATAAATTTTCAAAGAACACATCGATTATTTTAGCAACAGGAGCGATTATTGGTTCAACTATGCTGGTTGTTTTGATCGGTGGTTTCTTTCGAGTATACGTCTATTTTAAAACGAAAGGAGAAGATGAAACGAGACTTGAAAACTTTTTGAAGGATTATGAAGCGTCAAAGCCAACTCGATTTTCTTATACTGATATCAAAAGAATTACGGATCAATTCAAGGAAAAGCTAGGCGAAGGAGCTCATGGAGCTGTATATAAAGGTAAATTGTCGAGTCAAATTTTGGTTGCTGTAAAGATGCTTAATAATGCAGAGGGAGATGGGAGAGAGTTCATAAATGAAGTGGGAACTATGGGGAAAATCCACCATGTTAATGTTGTTCGGTTGCTTGGCTTCTGCGCCGATGGATTTCATCGTGCTTTGGTTTATGATTTTTTCCCGAATGGTTCGTTGCAAAATTTCATTTCTCCACCTGACAACGAGGATGCTTTCCTTGGTTGGGACTTATTGCAACAAATAGCTCTAGGCATTGCCATTGGAATTGAGTATCTTCACCAAGGTTGTGATCATAGAATTCTTCACTTTGATATCAATCCTCACAATGTCTTGTTAGATGACAATTTCATTCCAAAAATATCAGATTTCGGTTTAGCTAAGTTGTGCTCCAAAAATCAAAATACTGTATCGATGACTGCAGCTAGGGGAACATTAGGATACATGGCGCCTGAGGTATTTTCTAGAAACTTTGGAAATGTCTCTTATAAGTCTGATATATACAGCTACGGTATGTTACTGCTGGAGATGGTTGGAGGAAGAAAGAATACTAAAACAGTCATAGGCGAAGAAAATTTCCAAGTTTTGTATCCAGATTGGATCCACGGTTTACTTGACGGGGGAGACATTCATATCCCAATTGACGATGAGGGAGATTCCAAAATTGCAAAGAAACTAGCAATTGTAGGACTTTGGTGCATTCAGTGGCACTCTATGCATCGTCCGTCCATGAAAACTGTTATACAGATGCTACAAGGAGAAGGAGACAAGTTAAGAGTTCCGAGCAATCCTTTCAATGCTTCATATTCAACTAATATAACAGCTAATACTGCTACAGGATGTCTGAATTTAGAACTAGATGTTATTCAAGAACTAGACTAG 1737 0.3748 MSLTILALLLLVLINLVNGQSNNNSSDECPFRLSCSRNKNQTIEFPAIPVSVKLVVTDVDCQSQQLYISHPRNCLSSIFLTNNYSLFYPFYSSYYFQDDPFSDYNFTFFNCSSVGQHRLRNFEQTRPGAQDMLSCPIYVTYSEESVIELDLFPCTRMFDKVLPIDYISDIRENHLRLNWSEKTFHSQCLQYEKHNKFSKNTSIILATGAIIGSTMLVVLIGGFFRVYVYFKTKGEDETRLENFLKDYEASKPTRFSYTDIKRITDQFKEKLGEGAHGAVYKGKLSSQILVAVKMLNNAEGDGREFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFISPPDNEDAFLGWDLLQQIALGIAIGIEYLHQGCDHRILHFDINPHNVLLDDNFIPKISDFGLAKLCSKNQNTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTVIGEENFQVLYPDWIHGLLDGGDIHIPIDDEGDSKIAKKLAIVGLWCIQWHSMHRPSMKTVIQMLQGEGDKLRVPSNPFNASYSTNITANTATGCLNLELDVIQELD 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00962 578 ProSiteProfiles Protein kinase domain profile. 265 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00962 578 Gene3D Transferase(Phosphotransferase) domain 1 340 548 - -
Trre1g00962 578 Gene3D Phosphorylase Kinase; domain 1 239 339 - -
Trre1g00962 578 FunFam serine/threonine-protein kinase PBS1-like 233 339 - -
Trre1g00962 578 Pfam Protein kinase domain 267 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00962 578 SUPERFAMILY Protein kinase-like (PK-like) 247 536 IPR011009 -
Trre1g00962 578 PANTHER RUST RESISTANCE KINASE LR10-RELATED 237 553 IPR045874 GO:0004672
Trre1g00962 578 FunFam PR5-like receptor kinase 340 547 - -
Trre1g00962 578 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00962 Trre-Chr1 7342497 7344321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00962 179 569 Receptor kinase-like Gene Family AT1G66910 40.191 8.37e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g00962 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00962 - - tpra:123893308 1028.85