Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00953 ATGGACGGTGACCGAAAAATGGCCGTCCCTCATGTGGATGGACACGGCGATGGTGTTCAGAAAATTAGAGCAGCATTGCACGGGAGGACTACTGGTCCTACAAGGCGTTCTACAAAAGGGCAATGGACTCCCGAGGAGGATGAGACATTGCGGCTTGCTGTTCAGCGTTTCCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTCCAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCCGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAGGATGAGGTGATGATTGAATTGGTGAACAAATATGGGCCTAAAAAGTGGTCAACTATAGCACAACATTTACCTGGACGTATTGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAACAAATGGGCAGAATTAACGAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCGGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCCTTCTTACTCAGTTGCAATCTGCACCTCATGTTGGAAATCCTAGTCAACCAATGGTTGCAACATCTTCAAGGATGAAATGTAAGGAAGAAGATAATGTTCGTCGGGGGACTGAAGGAGATGAATTTTTAGAGTGTAGCCACGAGTCAGCTAATGCTCTCCAATTTCCATCCACTAGAGAGATGACCAGTGTTGACTTAAAAACTGTAGGGGGATATAGGCCAGATGAAGAATGTAGTCTTGCGACCGATCGTAGTCCAAGTCAAGCATCCTGTTCACATCAATATTATCTAGCAATTGACGCTGTTACTTTATGCATCTCAGAAATGGCTAATCATGATGCATGTTCTTCTGACTTCAGTGAACAATACTCGCATGAACCTGGAAATTCCACAAATGAGGATGGCCAGTTTAATTTACATTCCTTGCCCAATATTTCATCAAAGGAATTAGGGGAGGACTCCTCGCAGTTGCAAAGAGATTGTACAGAACCTAGTGGAATATGCGACTTGGTGAATGCTCCATATCAAACTTCAGTGAGTTTAGCTGTTTCAACGCCCATGGAAACTACATCTATGGATTCTGATAAACCAGATCATATGCTGATATCTGATGACGAATGTTGCAGAGTCCTGTTTTCAGAGCTAAATAATGATAGATGTTTTATCCCTGGAGATTATAATAAAGGTGTTGATGCTGTTGAATTTTCTGGTCACCCTGCATTTGTTTGTCAATCATGTCATATTCAGATTTCCGAAACTGGTGGAACCTCAACTCAGCCAATATCTTGTCCTCATTGTTCTAATAATTTTAAAGGAATGTCATCCTCCCAATGTACCCGTCCAGTACATTCTGCTGATCATGAGGATCAACAGTTTGTCTCCAGAGCACATGATGACTTCACTTATGCCAATGACACGTCAAGTTCTCGTTGTATTGATGCTATAGATAGTACAGTAATGCAAGATGTTAAACAAACCTGTTATCCAACAGATGAAAAGCCAAACATGCACACAGAAAAGGAGGACAACAGAGCACTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCATCAAGGTTGTGGGACTCACCTTCTCGTGATGATAGTCCGGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTGCGGGTACACCATCAATATTAAAGAAACGGTGCCGAGATTTGTTATCACCACTTTCAGATAAAAGAATTGGTAAGAAACTTGAGACTGAGATGGCATCCTCTTTGGTTAAAGCTTTTTCTAGTTTGGAAGCAGATATACTCTCTCCATCTTCATTGCAAAAGCAAAACTCGGGGGCTGCTGGTTTTGATGACGATAAAGAAAATTGTGGACAAGCTGATAAAGGTAAACAAGTAGAAGAGACAATTAGGTCTGTAATTTTGGAAGAAAGTAAGACTCAAAGAGATGCTCTTGACAGTAATTCTCCTGGTAAGGTAAAGCAGCAGCCTTTTGATGTCGATTCTAAAATGAAGATTGATGCTGCCGAGATTGTGCAGCAATCTTCTGGAGTTTTGTCCGAACATGATAGGAACGACCTTTCATTATATTCATCTGACCAAGTTGGTCTTAGAGACAGAGTTCCCAGAAACTCAAACAATAGGAGCTCGGAAATAGCTCTAAACCAGAGCAACCCTTCAAAATTATCTTCTGAGAACCAATGCTCAAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAATCTTACAGTTTCAGTCACTCGTGTAAAAGCTCCAGAGGCGAATTTGAGTGATCAAAGTAAAAATGATGGAGGTTTTGAAATGTGTAGCATATTTGGTGGAACACCTTTCACGAAAAGTTTTGAATCGCCTTCTGCATGGAAATCTCCTTGGCTCAGGAATGCTTTTCTCTGTAGCCCCAATCCCGAATTAACAATTGAGGATTTTGGATTTTTCAAGAGCCCGGGAGGTGATAAAAGCTACGATGCTATCGGGTTGTTAAGACAAGTCGGTGAACAAACTGCTGCAACATATGAAAATGCACAGGAGATTTTGAATAATGAAACTCCTAAAGCATTACCGAAAGATGCATCTAGAAATGATAAGAATAGCGACGAGGAAAACAACAATCCTAGCAAGGCAAACAGTTCTAAATATAGTTCAAATGATTTGGTTGAGTGTCGCATGCTTGATTTTAGTGAATGTGGAACACCAGAAAAGGGTGATAGCAGCAAATCCTCAGCTAGTCAACAATGA 2949 0.411 MDGDRKMAVPHVDGHGDGVQKIRAALHGRTTGPTRRSTKGQWTPEEDETLRLAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSAPHVGNPSQPMVATSSRMKCKEEDNVRRGTEGDEFLECSHESANALQFPSTREMTSVDLKTVGGYRPDEECSLATDRSPSQASCSHQYYLAIDAVTLCISEMANHDACSSDFSEQYSHEPGNSTNEDGQFNLHSLPNISSKELGEDSSQLQRDCTEPSGICDLVNAPYQTSVSLAVSTPMETTSMDSDKPDHMLISDDECCRVLFSELNNDRCFIPGDYNKGVDAVEFSGHPAFVCQSCHIQISETGGTSTQPISCPHCSNNFKGMSSSQCTRPVHSADHEDQQFVSRAHDDFTYANDTSSSRCIDAIDSTVMQDVKQTCYPTDEKPNMHTEKEDNRALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPSRLWDSPSRDDSPEALLKSAAKTFAGTPSILKKRCRDLLSPLSDKRIGKKLETEMASSLVKAFSSLEADILSPSSLQKQNSGAAGFDDDKENCGQADKGKQVEETIRSVILEESKTQRDALDSNSPGKVKQQPFDVDSKMKIDAAEIVQQSSGVLSEHDRNDLSLYSSDQVGLRDRVPRNSNNRSSEIALNQSNPSKLSSENQCSRFSSPCVRAKEHENLTVSVTRVKAPEANLSDQSKNDGGFEMCSIFGGTPFTKSFESPSAWKSPWLRNAFLCSPNPELTIEDFGFFKSPGGDKSYDAIGLLRQVGEQTAATYENAQEILNNETPKALPKDASRNDKNSDEENNNPSKANSSKYSSNDLVECRMLDFSECGTPEKGDSSKSSASQQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00953 982 MobiDBLite consensus disorder prediction 913 953 - -
Trre1g00953 982 Gene3D - 144 207 - -
Trre1g00953 982 MobiDBLite consensus disorder prediction 925 939 - -
Trre1g00953 982 SMART sant 38 87 IPR001005 -
Trre1g00953 982 SMART sant 90 139 IPR001005 -
Trre1g00953 982 SMART sant 142 190 IPR001005 -
Trre1g00953 982 PANTHER MYB PROTEIN-RELATED 39 112 - -
Trre1g00953 982 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Trre1g00953 982 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Trre1g00953 982 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Trre1g00953 982 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Trre1g00953 982 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Trre1g00953 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Trre1g00953 982 MobiDBLite consensus disorder prediction 767 795 - -
Trre1g00953 982 Gene3D - 91 142 - -
Trre1g00953 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Trre1g00953 982 CDD SANT 145 185 IPR001005 -
Trre1g00953 982 MobiDBLite consensus disorder prediction 670 728 - -
Trre1g00953 982 MobiDBLite consensus disorder prediction 683 712 - -
Trre1g00953 982 FunFam Transcriptional activator Myb isoform A 91 143 - -
Trre1g00953 982 CDD SANT 93 137 IPR001005 -
Trre1g00953 982 MobiDBLite consensus disorder prediction 207 230 - -
Trre1g00953 982 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Trre1g00953 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Trre1g00953 982 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Trre1g00953 982 FunFam Transcription factor MYB3R-2 144 206 - -
Trre1g00953 982 Gene3D - 38 90 - -
Trre1g00953 982 MobiDBLite consensus disorder prediction 759 795 - -
Trre1g00953 982 MobiDBLite consensus disorder prediction 317 355 - -
Trre1g00953 982 CDD SANT 42 85 IPR001005 -
Trre1g00953 982 FunFam Transcriptional activator Myb isoform A 38 90 - -
Trre1g00953 982 MobiDBLite consensus disorder prediction 207 221 - -
Trre1g00953 982 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00953 Trre-Chr1 7237743 7243434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00953 27 972 MYB Transcription Factor Family AT4G32730 41.393 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g00953 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00953 - K09420 aprc:113848458 1308.51