Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00944 ATGGAAAGAGTTGTTGGAGGAAAGTATAGAATTGGTCGCAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTGCACATATTGCGACTTCTGAGCTTGTTGCCATTAAGAAGGAGAGCAAGAAAACCAAACAACCGCAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTCGAAGACCTCCTTTACTACTGTGGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAGTTTTTACATTCGAAGGGATTACTGCATAGAGATATCAAACCAGATAACTTCCTCATGGGTCTTGGGAAGAAAGCAACTCAGGTTTGCATGATTGATTTTGGGCTTTCAAAAGGATATAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACAGCACGTTATGCAAGTTGCAATACTCATAAAGGAATTGAGCAAAGTCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTACCAGCTGCCACCAGAATGCAAAAATATGAAAAGATTTGCGATATGAAGTTATCAATTCGTGTTGAGGTACTTTGCAAGTCATATCCCGTGGAGTTTGCTTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGAGGCTGATTATTTATACGACTGGACAATTTTAAAATATCAGGAGATTCAAAAGGCAAAGGCACAAAATCTATCAATTGCTCCACTTGCTGTGCCTACCAGTCTTGAGCCAGCAGATGTGGATGAGCATACAGAAGTCAATGATTGTACTCAAAATGGTGAGGCAAAACCAACAGTCTATACCGATCGTCCGCGTGTTTGTATGAACCTCAGGGTAGCAAATGCTGAAAATCCAGATCTTGATGACGAGATTGAAACAGATAAACAGAATGTAAATACTGGTTTACCTATTTCCACTGTCACGCATATAATCTCTACAGAAAATGTCGCAAAACCAGAAAGCACTGTAGAAGTCTCAAACCCGGATGGCGTGTTAGGGAGTAAATGCGGTGTCTCAAGTGATGTTGTTCCTTCACTACGCCGAGTTTCATCCATCAATTAG 1287 0.3994 MERVVGGKYRIGRKIGSGSFGEIYIGAHIATSELVAIKKESKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLEDLLYYCGGKFSLKSVLMLADQMLTRIEFLHSKGLLHRDIKPDNFLMGLGKKATQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLPAATRMQKYEKICDMKLSIRVEVLCKSYPVEFASYFHYCRSLTFDQRPDYGYLKRLFRELFTSKGYEADYLYDWTILKYQEIQKAKAQNLSIAPLAVPTSLEPADVDEHTEVNDCTQNGEAKPTVYTDRPRVCMNLRVANAENPDLDDEIETDKQNVNTGLPISTVTHIISTENVAKPESTVEVSNPDGVLGSKCGVSSDVVPSLRRVSSIN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00944 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Trre1g00944 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre1g00944 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre1g00944 428 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00944 428 FunFam CK1 family protein kinase 1 325 - -
Trre1g00944 428 Pfam Protein kinase domain 9 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00944 428 PANTHER CASEIN KINASE-RELATED 7 334 - -
Trre1g00944 428 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Trre1g00944 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00944 Trre-Chr1 7174687 7179141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00944 8 213 MAP Kinase Kinase Kinase AT1G54960 27.523 9.38e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre1g00944 Pkinase 1.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00944 K08960 - gmx:100782913 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05426 5 54949947 54954335 Trre1g00944 1 7174687 7179141 PCT