Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00940 ATGAGAGTTTCATCACAAAATTCAGAAACCGAGAGCACCTCAAATTCATCACCACCAACATCACCATGTACAACAAACTCAATTCAAGACCAAGAATCCAACAAGAATCTTAAACGCAACCGCGACTCAAACAAACACCCCGTCTACCGAGGTGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCTGAAATCCGTGAACCTCGTAAGAAATCACGGATTTGGCTCGGCACTTTCCCCACAGCTGAAATGGCTGCCAGAGCGCACGACGCAGCTGCGCTCAGTGTTAAAGGAAAAACCGCCATTCTCAATTTTCCTCACCTGGCATCCTCTCTTCCAAAACCCGCTTCTTTAGCCCCTCGCGATGTTCAAGCCGCGGCAACTAAAGCAGCTCAAATGGACTTCAAATTAGAATCACCGTCATCTTCTTCTTCATTTACATCATTGTCATCGATGACGTCATCGATAACAACAATCACATCATCAACAAGTCTGTTAATGAAAACAGCGACAACGCTGTCTTCATCACCAGACTTGTCAAATACTTCAGAAGAACTTAGCGAGATTATTGAACTACCAACTTTGGAAAATGTTTATGATGATGTTGGAAAAGAGGAGTTTTTGTTTGTTGACTCACAATCACAAGACTATGCTTGGATGTATCAGCAACCAATGACATGGCTACATACAACACAAGAAGATGGTTCTTGTTGTGGTGATGATGGTGTTGTAACTAGTTTCGAGAGTTTTCTATGGAATTACTAG 762 0.4278 MRVSSQNSETESTSNSSPPTSPCTTNSIQDQESNKNLKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALSVKGKTAILNFPHLASSLPKPASLAPRDVQAAATKAAQMDFKLESPSSSSSFTSLSSMTSSITTITSSTSLLMKTATTLSSSPDLSNTSEELSEIIELPTLENVYDDVGKEEFLFVDSQSQDYAWMYQQPMTWLHTTQEDGSCCGDDGVVTSFESFLWNY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00940 253 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g00940 253 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g00940 253 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Trre1g00940 253 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 MobiDBLite consensus disorder prediction 34 49 - -
Trre1g00940 253 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 197 - -
Trre1g00940 253 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trre1g00940 253 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Trre1g00940 253 FunFam Ethylene-responsive transcription factor 2 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00940 Trre-Chr1 7141004 7141765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00940 7 233 AP2-EREBP Transcription Factor Family AT5G11590 53.017 4.91e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g00940 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00940 K09286 - gmx:100305349 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00940 1 7141004 7141765 Trre1g00940 1 7141004 7141765 ECH