Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00936 ATGGAAGGAACAACCAACATTTTCCAAACCACATTTTGCCCACAACTCCCTTCCTCCTCCTCCGAAAACAATGGCGTCAAGGCCAATAATGCAATCGTCGAACAATTCATTGTTGAGGATCTTCTTAACCTCAACGATGACGTTGACGATGCTACTATCATTTCTAACACCAACCTTGACTCTGCCACTGGCAACTCAACTGCCTCATCCTCCACCGCAACGGTTGTCAATAGCGTCAGCTCGCCATCATTGTCCGGGTGCGACCCCAATCTCGTTCCTGATATTGGCTGCCATTTCTCCGGAGACTTGTGTGTTCCGGATGATGATTTAGCAAAGCTGGAATGGCTTTCGAATATTGTGGAGGAATCGTTTTCAAACGAGGATCTCCAAAAGATGCAACTGATATCAGGCATGAAGGTGCAAAACAAGGACGATGGGCCCCGTGAGTTTTCCCAGCTCAACCGAAACAATCCGATATTCAACAAAGAAGTTTCGGTTCCAGCTAAGGCTCGTAGCAAGAGGACTCGCGGGCCCCCATGTGACTGGAGTTCACGTCTTCTTGTACTGTCTCAAACGACCCCGCCTTCTTATGAGTCAGAGGAAATCCTTATTCCCACTCTGACCTTACCTTCCGCCACTATTCCAAAGAAGCAGCCGAAGACTGCTCCGAGAAGAAAGGACAATAATGACGGAGGGTCGGGCGGAGATGGGCGTAGGTGCTTACATTGCATGACGGACAAGACACCACAATGGAGAACGGGGCCTAAGGGTCCAAAGACATTATGCAATGCGTGTGGTGTAAGATATAAGTCAGGTCGGTTGGTGCCTGAATACAGACCTGCAGCGAGCCCAACATTTGTGTTGACCAAACACTCCAACTCACACCGTAAAGTGTTAGAGCTACGGAGGCAGAAGGAAATGTTGCAGGCACACCAACACCAACAGAACCAATTCTTACAACATCAAAATATGATGTTTGATATGTCAAATGGTGAAGATTACTTGATTCACCAACATATGGGACCCGATTTTAGGCAGATGATGCAGTAG 1050 0.4771 MEGTTNIFQTTFCPQLPSSSSENNGVKANNAIVEQFIVEDLLNLNDDVDDATIISNTNLDSATGNSTASSSTATVVNSVSSPSLSGCDPNLVPDIGCHFSGDLCVPDDDLAKLEWLSNIVEESFSNEDLQKMQLISGMKVQNKDDGPREFSQLNRNNPIFNKEVSVPAKARSKRTRGPPCDWSSRLLVLSQTTPPSYESEEILIPTLTLPSATIPKKQPKTAPRRKDNNDGGSGGDGRRCLHCMTDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLQAHQHQQNQFLQHQNMMFDMSNGEDYLIHQHMGPDFRQMMQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00936 349 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Trre1g00936 349 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Trre1g00936 349 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Trre1g00936 349 PANTHER GATA TRANSCRIPTION FACTOR 37 316 - -
Trre1g00936 349 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Trre1g00936 349 PIRSF Txn_fac_GATA_plant 17 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre1g00936 349 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Trre1g00936 349 FunFam GATA transcription factor 229 317 - -
Trre1g00936 349 Gene3D - 233 316 IPR013088 GO:0006355|GO:0008270
Trre1g00936 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 298 - -
Trre1g00936 349 MobiDBLite consensus disorder prediction 208 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00936 Trre-Chr1 7099342 7101021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00936 96 348 C2C2-Gata Transcription Factor Family AT5G25830 57.037 3.86e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre1g00936 GATA 3.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00936 - - psat:127091887 467.618