Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00932 ATGCCTCCTCAACTCCGAACCAGAACACCAAAAACCAACCCCAACCCGAATCAAAACCCGATCATTAAACCCGCTCCAAGAGGTAGAAGAGGTAGACCTGCTAGAAACCGTAACCCGATCGTTGATTTCGCGCGTGATAATCAAATCCATAACAACCACCACCAAGTTCAACAAAACGAACAACCTCACGCGCCTCTTGTTAGGGTTTCTAGAGATATAGTAATTAAACAAGATATTATGGATGATGACTGTGATAGCGGTGGTCGGACTGCCGATAATAAAGCTCCGGTGGCTGAAGATGAAGGAACTACACCTCCTATTCCTGAAAAAGTTCAGGTAGGTGGTTCACCGATGTATAGAGTAGATAGAAAGCTTGGGAAAGGAGGATTTGGACAGGTTTATGTTGGTCGCCGTGTCGGTGCCGGAGCAGGAGCTTCTGAGGTGGCTTTGAAGTTTGAGCATAAAAGTAGTAAGGGGTGTAATTACGGACCTCCTTACGAGTGGCAAGTTTACAATGTATTAGGTGGTAGTCATGGCGTTCCACGAGTTCATTACAAGGGAAAGCAAGGTGATTTCTATATTATGGTCATGGATATTCTTGGCCCTAGTTTATGGGATGTTTGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGGCATGTATAGCAATCGAGGCTATCTCCATATTAGAAAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCCCTCCGGGAACTCATGAAGAGAAAAAGCTTTTTTTGGTTGATCTTGGATTAGCAACCCGTTGGCGTGATAATTCGACTGGTCTTCATGTTGACTACGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCAAGTGTCCACGCTCATCTTGGTAGAACAGGTAGCAGAAGAGATGATTTGGAATCTCTTGCTTACACACTAATATTCCTTCTTCGTGGACGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTCGTCTGCAAGAAGAAAATGGCTACCTCACCAGAAAATATGTGTATTCTTTGTCCCGCACCTTTTCGGCAGTTTATCGAGTACGTAGTGAATTTGAAGTTTGACGAAGAACCAAATTATGCAAAATATATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACGTTAGACCCATAAACACTGATGGTGCACAGAAGCTTATATATCAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAAGATGATGATGAACAGCCAAAGAAGAAAGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCACGCCGACCTATGAAGCAAAGGTACCATTACAATGTTACTGATGTGCGGTTGTCCCAACACATTGAGAAGGGATATGAAGATGGGTTATTTATCAGCAGCGTAGCGTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCCAATTCCTTCACAAGGAATGGATTATGGAACAATGGGAAAAAAATTATTACATTAGTGCCATAGCAGGATCTAATAATGGGAGCTCTTTGGTTGTAATGTCGAAAGGGACCCAATATTTGCAGCAATCCTATAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTTGTCACTGCTATGGCCACATCTGGAAGTAGATGGGCAATTGTCATGTCTCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACGGTGGTTACCGCATCACTTCAACTGCTGCTACATATGACCAAGCTGCTCTTGTTCTTAGTATTCCAAGAAAGAAACCAACTGATGAAACACAAGAAACACTTCGCACATCTGATTTTCCTAGTACTCATGTCAAGGAAAAATGGTCAAAGAACCTCTATATTGCATCTATTTGTTATGGAAGAACAGTTTCATGA 2040 0.4235 MPPQLRTRTPKTNPNPNQNPIIKPAPRGRRGRPARNRNPIVDFARDNQIHNNHHQVQQNEQPHAPLVRVSRDIVIKQDIMDDDCDSGGRTADNKAPVAEDEGTTPPIPEKVQVGGSPMYRVDRKLGKGGFGQVYVGRRVGAGAGASEVALKFEHKSSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGKQGDFYIMVMDILGPSLWDVWNNKTHTMSAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTHEEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEYVVNLKFDEEPNYAKYISLFDGIVGPNPDVRPINTDGAQKLIYQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVTDVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSQFLHKEWIMEQWEKNYYISAIAGSNNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATSGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATYDQAALVLSIPRKKPTDETQETLRTSDFPSTHVKEKWSKNLYIASICYGRTVS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00932 679 MobiDBLite consensus disorder prediction 1 37 - -
Trre1g00932 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Trre1g00932 679 SUPERFAMILY Protein kinase-like (PK-like) 119 394 IPR011009 -
Trre1g00932 679 SMART serkin_6 119 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00932 679 Gene3D Transferase(Phosphotransferase) domain 1 90 438 - -
Trre1g00932 679 CDD STKc_CK1 118 388 - -
Trre1g00932 679 FunFam casein kinase 1-like protein HD16 92 435 - -
Trre1g00932 679 PANTHER CASEIN KINASE-RELATED 111 644 - -
Trre1g00932 679 MobiDBLite consensus disorder prediction 81 109 - -
Trre1g00932 679 ProSiteProfiles Protein kinase domain profile. 119 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00932 679 Pfam Protein kinase domain 119 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00932 679 ProSitePatterns Protein kinases ATP-binding region signature. 125 151 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00932 Trre-Chr1 7074522 7078918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00932 83 337 AGC Kinase Gene Family AT3G08720 22.605 1.41e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre1g00932 Pkinase 5.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00932 - - vvi:100254265 1111.29