Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00907 ATGGCAACCATTTTCTCAAGTCCTCGTTTTCTGCTAAATACACTGAAATTCACTTCGCGTTCAAACGCCGTTAATCTGAGAAGAATTTTCCGTCTATCAGAAATGAACACTTCAGCTAGGGTTTCCAGTAACGGTGACGGTGGCGTAGTTCGTTTCCCGTTATCTTCATCAAACGCTTTGATCATTCAGAGAGGAGATATCACAAAATGGTCTATCGATGGTTCCACTGACGCAATCGTAAATCCTGCAAATGAGAGAATGCTTGGAGGTGGTGGTGCAGATGGAGCTATACATAGGGCTGCTGGTCCAGATCTTGTTAGAGCATGCCGGAATGTACCAGAAGTCAGGCCTGGCGTTCGCTGCCCAACAGGGGAAGCAAGGATCACACCAGGTTTCTTGCTGCCTGCTTCTCATGTTATTCATACTGTTGGCCCAATCTACGATGTTGATAGTAATCCTGCTGCCTCTCTGGCAAGTGCTTACAGGAATAGTTTGAGGGTTGCAAAAGAGAACAACATTCAGTATATAGCATTTCCGGCCATATCATGTGGTGTCTATGGATACCCTTACGATGAAGCTGCTACTGTAGCAATTTCTACCATCAAAGAGTTCCAAAATGACTTTAAAGAGGTCCACTTTGTTCTCTTCGCGTCTGACGTTTATGACATTTGGTTAAATAAGTCAGATGAATTGCTGAGAGATTAG 705 0.4411 MATIFSSPRFLLNTLKFTSRSNAVNLRRIFRLSEMNTSARVSSNGDGGVVRFPLSSSNALIIQRGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDLVRACRNVPEVRPGVRCPTGEARITPGFLLPASHVIHTVGPIYDVDSNPAASLASAYRNSLRVAKENNIQYIAFPAISCGVYGYPYDEAATVAISTIKEFQNDFKEVHFVLFASDVYDIWLNKSDELLRD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00907 234 SMART YBR022w_8 59 197 IPR002589 -
Trre1g00907 234 SUPERFAMILY Macro domain-like 59 228 IPR043472 -
Trre1g00907 234 Gene3D Leucine Aminopeptidase, subunit E, domain 1 23 233 IPR043472 -
Trre1g00907 234 Pfam Macro domain 80 197 IPR002589 -
Trre1g00907 234 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 38 231 - -
Trre1g00907 234 CDD Macro_OAADPr_deacetylase 60 227 - -
Trre1g00907 234 ProSiteProfiles Macro domain profile. 47 232 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00907 Trre-Chr1 6901557 6904649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00907 65 170 C2H2 Transcription Factor Family AT5G01310 35.294 1.37e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00907 K23518 - gmx:100811169 359.377