Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00905 ATGGCTTCACCAACAACAACACTAAGCCGTAGAAGAACACAAGCTCCAATTCCAGCTCCTAACTTCGACGACGTCGTTTGCCAAAAATGTAACTCCGGCAAATCTCCATCCAAATTGCTTCTCTGCGACAAATGCGATAATGGCTATCACATCTTCTGTCTCACACCTATCCTCCATTCCGTTCCTAAATCCTCTTGGTTTTGTCCTTCTTGCTCTCACAATCCCCAAAATCCCAAATCTTTTCCTCTTGTACAGACGAAAATTATTGATTTTTTCAAAATTCAACGAACATCTGATGCGGCTCAGATTCCAAATCAAGATGCTAAGAAGAAGAGAAAGAGAGGGAGTAGTTTGGTGGTTTCGAAAAAGAAAAGGAGGTTGTTGGCGTTTGTTCCGAGTGATGATTCTAATAGGAGATTAGAACAGATGGCGTCATTGGCAACAGCGTTGACTGCGACTAAAACAGTGTTCAGAAATAAGCTTGTCTATATGGCTGGAATGGCACCAAGGCGTGCTAATGATCCTGCTCTTGAACGTGGAGGAATGCAGGTCTTATCAAAAGAAGACACAGAGACCCTAAACATGTGTAGAACTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTCGTGTATGATCCTCTGGAAGGGTTCACTGTGGAAGCTGATAAACCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAGAATCGGGAATATGACGACGGGGATAGCATTATGACACTTCTTACCGCTTCTAATCCTTCACAATCACTGGTCATCTGCCCAGATAAACGTAGCAACATTGCACGTTTCATTAATGGAATCAACAATCACACACCTGAGGGTAAAAAGAAGCAGAACTTGAAATGCGTGAGATTTAATGTTGACGGTGAATGCCGGGTTCTTTTAATTGCCAATAGAGATATAGCAAAGGGGGAAAGGTTGTACTATGACTACAATGGATTAGAACATGAATATCCAACCGAACATTTTGTCTAA 1023 0.4135 MASPTTTLSRRRTQAPIPAPNFDDVVCQKCNSGKSPSKLLLCDKCDNGYHIFCLTPILHSVPKSSWFCPSCSHNPQNPKSFPLVQTKIIDFFKIQRTSDAAQIPNQDAKKKRKRGSSLVVSKKKRRLLAFVPSDDSNRRLEQMASLATALTATKTVFRNKLVYMAGMAPRRANDPALERGGMQVLSKEDTETLNMCRTMMERGECPPLMVVYDPLEGFTVEADKPIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLTASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFNVDGECRVLLIANRDIAKGERLYYDYNGLEHEYPTEHFV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00905 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 89 IPR013083 -
Trre1g00905 340 ProSiteProfiles SET domain profile. 206 328 IPR001214 GO:0005515
Trre1g00905 340 SMART PHD_3 26 72 IPR001965 -
Trre1g00905 340 Gene3D SET domain 112 340 IPR046341 -
Trre1g00905 340 SUPERFAMILY SET domain 199 328 IPR046341 -
Trre1g00905 340 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Trre1g00905 340 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Trre1g00905 340 CDD PHD_RSF1 27 71 - -
Trre1g00905 340 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 100 338 - -
Trre1g00905 340 CDD SET_ATXR5_6-like 203 340 - -
Trre1g00905 340 FunFam Histone-lysine N-methyltransferase ATXR5 111 340 - -
Trre1g00905 340 SUPERFAMILY FYVE/PHD zinc finger 23 80 IPR011011 -
Trre1g00905 340 Pfam PHD-finger 26 73 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00905 Trre-Chr1 6887866 6890547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00905 17 71 C2H2 Transcription Factor Family AT3G01460 43.636 2.06e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g00905 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00905 K24406 - gmx:100791762 532.332