LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g00892	ATGGGAAGAAAAGGAGGAAGCTGGTTCTCTTCGGTTAAGAAAGTTTTTAAGTCGTCATCATCTTCTAAAGATACGTCAGTGACCGTCTCCACGCCCGTGCAGCCGGACAAAAAGAAAGAAAACAGAGAAAAATTGGGGCATGAAGCGGCAGAGGAGGTGTCGTTCGAGCATTTTCCAGCAGAGAGTTCACCTGATGATGTAACCAATGAAGAGAGTACGACATCAACGCCTGCAAGGGACGATAGAAATCACACCATTGCCGTTGCAGAAGCTACTGCAGCAGCTGCTGAAGCTGCTGTGGTAGCTGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCTGGTTATGGACGCCAATCCAAAGAAGAAAGAGCAGCAACATTCATTCAATCACACTATAGAGGATACCTAGCTCGCCGCGCATTGCGTGCGTTGAAAGGATTAGTGAGGCTACAAGCATTGGTACGAGGACACAATGTGCGCAAGCAAGCGCAAATGACAATGCGATGTATGCAAGCATTAGTGCGGGTGCAAGCACGAGTGCGAGCACGCCGAATTCAATTGAGTCATGAGAATCTTGAGAAAGCAATGGAGGAAGAGGAAGAATTTTTGAGGCAACAGGAAACTATTACTAAGCCTATGAGTCCTATGAGGAAATCATCAAGCAATAATAATAATAATGGTTGGGATAACAAGCGTCTAAGTGTGAAAAAAGCTAAAGAAAATGATTTGAGAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAACAGCAACATCAAAAGCAACATTTACATAGAAATTCAAATGGTGATGATGTTGAGATGGGAGCCTATCATCCAAATGATCAAGAAAAAGCCCAATGGGGTTGGAACTGGTTGGAGCATTGGATGTCATCACAACCCTACAATGTAAGACACTTAGGCCAACGTGAGAGCTCTTACATGACACTTCCTTCAACAACATCAACAACAACAGATAACATGTCTGAAAAAACTGTTGAAATGGACATTGTTGCAACACCAAGTAGAAGCAACTACAATTTGGGCCTAATGGGCCAAGAGTTTCACGATGCAAGCCCAAGTTACAGTAGGCATCAAAGACCACCTAGTCCAGGTAGGCCTAGCTACATGGCTCCAACTAAATCTGCGAAGGCTAAGGTTAGGGCTGAAGCCCCATTTAAGCAGAGGTTTCCATCTGGGGCTAACTGGAACTCGTCTACTAAAAGAGGATCGATTATCGGATCAGGCTGCGACTCGTCCAGCTCGGGTGGTGGAACGACATCTACTTACCAATTTCCAAGAAGCCCAGGCCCAAAAGTTAATGGCATTCGTTCAGAGTCTAGACGGATTGTGGGCGGTAGTCAAGACTACACTGAGGATTGGGCCGTTCCAATTGGAGCCCATGGTTGGGCTTAA	1437	0.453	MGRKGGSWFSSVKKVFKSSSSSKDTSVTVSTPVQPDKKKENREKLGHEAAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRNHTIAVAEATAAAAEAAVVAAQAAARVVRLAGYGRQSKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLSHENLEKAMEEEEEFLRQQETITKPMSPMRKSSSNNNNNGWDNKRLSVKKAKENDLRKHEAAMKRERALAYAFNYQQQHQKQHLHRNSNGDDVEMGAYHPNDQEKAQWGWNWLEHWMSSQPYNVRHLGQRESSYMTLPSTTSTTTDNMSEKTVEMDIVATPSRSNYNLGLMGQEFHDASPSYSRHQRPPSPGRPSYMAPTKSAKAKVRAEAPFKQRFPSGANWNSSTKRGSIIGSGCDSSSSGGGTTSTYQFPRSPGPKVNGIRSESRRIVGGSQDYTEDWAVPIGAHGWA	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	210	231	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	405	442	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	16	34	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	363	389	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	403	458	-	-
	Trre1g00892	478	ProSiteProfiles	IQ motif profile.	145	172	IPR000048	GO:0005515
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	16	83	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	35	59	-	-
	Trre1g00892	478	PANTHER	IQ-DOMAIN 5-RELATED	1	425	-	-
	Trre1g00892	478	Gene3D	-	118	170	-	-
	Trre1g00892	478	ProSiteProfiles	IQ motif profile.	121	149	IPR000048	GO:0005515
	Trre1g00892	478	SMART	iq_5	120	142	IPR000048	GO:0005515
	Trre1g00892	478	SMART	iq_5	143	164	IPR000048	GO:0005515
	Trre1g00892	478	Coils	Coil	236	256	-	-
	Trre1g00892	478	MobiDBLite	consensus disorder prediction	210	233	-	-
	Trre1g00892	478	Coils	Coil	189	209	-	-
	Trre1g00892	478	Pfam	Protein of unknown function (DUF4005)	368	431	IPR025064	-
	Trre1g00892	478	Pfam	IQ calmodulin-binding motif	122	142	IPR000048	GO:0005515
	Trre1g00892	478	Pfam	IQ calmodulin-binding motif	148	163	IPR000048	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g00892	Trre-Chr1	6800968	6805671	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g00892	1	477	IQD Protein Family	AT3G49260	49.405	1.97e-104	318

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g00892	-		-	gmx:100798026	496.508