Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00886 ATGCTGACGGTTATTGGGTTTGGAACTGAAGTCATCAATGGACAACCAGTACCGTATTGGCTCATCCAAAACTCGCATGGTCCAGATTGGGGCCATAACGGGTATGGAAAATTTTCCATGAATATATGGGGCCCCGGAGGAAAGCCACTTATTTCAGACGGAGTTGTGCCCACCGTATTGGCCACTCCACAGCCTGCGTATCTTCAATCCGGTCCTACAACGAGGTATATCATGTCTAGAATAATACCTGCGTGGCGGGCAGGATCTGCGCGTGCTGATGACCAAGATGATGAAGCGCAAGCAGTGGTAAAGAAATTGGCTACCGCACCAAGCCAAGCACCCAAGAGGCCAAGTCAAGTCACTGATGCTGTTAATCTGGTCAACTGTATGGATCTGACAGAGGTTCAAGGCGGGGAGGTTGCAACTACCAATTTGCATTCTTGCAATGGTTCTGAATTTGTTCTGCAGCTTCATATGTCTCGTTTACAGGACCATGGTTCAAGGGAACTCCAAAAAGCAAATGCACGTCTTAGATTTGTATATTTCCCTTTCATAGAGGGAAAGGAGAAGGCTCGCTGGCCTTTACTTCCTTTTATGGACTATAGGAACAAAAGGGAGACTTATAAGGCAGGGATATTGAAGAGATGTTCCATGAGGGTTAAATGCTATGTTGAAACTGATGCTGGTTTTAAGCCTACTCAGTCAAAGACGGATTTAGCTCACCACAATCCTTTTACCATTGCTTTAAAGAACTTGGGCAGTAAAATCTCAGACAAAGAGACCGATGTTTCTGTTGAAATTACCAGGGATAAAAAAGTGATAACTCCTTTACAGCTAGAAAAGGAGTACCGGGAGTGGATATTACATATGCACAATGATTTTGATGTAGAAGCTGATGCCGGTGACTGTGAGGATAAACCGGTTATACTTCTCAATCCACCAAACAAGAAAGCACTTGGCCTTTCAAATGATGTCATCAGAGTTCATCGGGTTCTGAAGAGAAAGGAAAAGACATGGAGTAGTGGACAGAGAATTAAAGTGTTAAAGGGAGCATGCGCAGGGTGTCACAGCCAGAATGTTTATGCAACCATAGAGTACTTTTTGCTTGAAAATTTTGAAGGAGAGACGGGTGGAGATGCTCGGATCATATGCAGGCCAATCGGTATCCCAGAAGAAAATGGATGCTATCTTGATGTGAGTAATGAAGAAAACCCCACATTGGATATTGGTAGGGCTTTGTCTTTACCTATGACCGTGATTGACAACGAAAAGCTTGTACCTGTTGAAACTATTCAATGGGAAAATCGACTTAAAAAGATAAAACAGAAATCTCCTGCTTCTATTCCGGTCCCACACCATTATAATCGGAAGCAGGCTGATGTGGTGGATTCAATCAGTAGAAATTTTGACAAAAGGGTGACAGCAACACCTTCTCATTGTGCTGTGGAGTACAAACTTCTAACTGATGACCAATGTCAAGAGCTTGATGTGAGGGTTGGTTCTACCTTTCCAACCTTAGCCATTGCAGGTTATGACATCCATGGTAATCAAGCACCTTTTCAAGAAACTCCAGAGGATCTGACGGTTCAACTTCAGGCAGCAAAGGACTTGTACTTCAAAGTGCAAGGAATGTATATTGGTCTTTCAGTTGACAAAATGGCTTTACAAATCATGGATGCAATGGTTATAAGTAGTGAATTGGATAAGATAAGTCCTACCTATAGAGCTACTTTGATGATTACTTCAAAAAGTGTTCCATTGTCACTATCTTTTCCATGTCGAGTTTTTCCTAGTTCTGTCAAACACGTTGAACTGATACCTGAGATAACAGAAGAACAACTACATCCAGGATTCATTTTCAAGGAGTTAATGTTGGAGGTGGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTAGCTAGACAAGCTGCTCTTGCTCGAGAGAGAGATAAATCTAATGAAAGTCCTATGCTCCATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGCAGGCATCTGAAGGAGCTAGTCATTCAGATGGTAAGGCTATAATTAAGCCACTTCCACAACGCGTTGTGAATAAACCTCCTCCTAGAAGACTGGTATATATCTCTGCTGATGATGAAGAAAGTGAAGATGAATGGGTAGAGGTTGATTCTGATGATGATCTGCATGATGATGCTGCAAAGTCCTTGACAGATTTGAATGTGGATGAGAATGCTGATAATGATGATATGAACGAAGATGATGATGATGATGATGATGATGTTGTGGATTTGGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAAACATTAGAAAGCTGCATGGTTCACATGCACAAGCACCATGGGCTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTCACCTATCTTGGACTGAAGGTCAAAAGGGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATAGCAGCAAAAAATCACTGTAAAGTGCATTATGGTGACGATGACGATGAGGAGGAAGTAGAGCTGGAAGAGTTCTATGATTATACCAGCAGTTATTTTGATGAGCAAGGGAAGCAGCTAGTTGTATCCGGTGATGCTGATAACAATATAGAACTTAGTGATGGGTCTGAGCTTGTAATCACTAAGCTATCTGGTAACAAAAAATCAACCAGAACTCTAGGAAGCCGCGAATACCTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATAACGTTGCTGTTACTGCGGAATTGGCTGCAAGGTACCGGAGCATGGGTTTGGCCACTGTACAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGCGTGGAGCAAATGCGTCGCAAGATGGGAATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACCTATTAG 3018 0.4288 MLTVIGFGTEVINGQPVPYWLIQNSHGPDWGHNGYGKFSMNIWGPGGKPLISDGVVPTVLATPQPAYLQSGPTTRYIMSRIIPAWRAGSARADDQDDEAQAVVKKLATAPSQAPKRPSQVTDAVNLVNCMDLTEVQGGEVATTNLHSCNGSEFVLQLHMSRLQDHGSRELQKANARLRFVYFPFIEGKEKARWPLLPFMDYRNKRETYKAGILKRCSMRVKCYVETDAGFKPTQSKTDLAHHNPFTIALKNLGSKISDKETDVSVEITRDKKVITPLQLEKEYREWILHMHNDFDVEADAGDCEDKPVILLNPPNKKALGLSNDVIRVHRVLKRKEKTWSSGQRIKVLKGACAGCHSQNVYATIEYFLLENFEGETGGDARIICRPIGIPEENGCYLDVSNEENPTLDIGRALSLPMTVIDNEKLVPVETIQWENRLKKIKQKSPASIPVPHHYNRKQADVVDSISRNFDKRVTATPSHCAVEYKLLTDDQCQELDVRVGSTFPTLAIAGYDIHGNQAPFQETPEDLTVQLQAAKDLYFKVQGMYIGLSVDKMALQIMDAMVISSELDKISPTYRATLMITSKSVPLSLSFPCRVFPSSVKHVELIPEITEEQLHPGFIFKELMLEVAGVPGVTEALFLARQAALARERDKSNESPMLHSCGLCGKGYKSEKAHAEHLKSRTHMMQASEGASHSDGKAIIKPLPQRVVNKPPPRRLVYISADDEESEDEWVEVDSDDDLHDDAAKSLTDLNVDENADNDDMNEDDDDDDDDVVDLDPSCCFMCDKEHKTLESCMVHMHKHHGLFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHIAAKNHCKVHYGDDDDEEEVELEEFYDYTSSYFDEQGKQLVVSGDADNNIELSDGSELVITKLSGNKKSTRTLGSREYLRYYRQKPRPSPANNVAVTAELAARYRSMGLATVQSREQLVRMKVLKQMNRSGVEQMRRKMGMKSNVIRNLPNNVTY 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00886 1005 Pfam Papain family cysteine protease 3 41 IPR000668 GO:0006508|GO:0008234
Trre1g00886 1005 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 150 462 - -
Trre1g00886 1005 ProSiteProfiles Zinc finger C2H2 type domain profile. 659 688 IPR013087 -
Trre1g00886 1005 MobiDBLite consensus disorder prediction 753 769 - -
Trre1g00886 1005 Gene3D Cysteine proteinases 1 44 - -
Trre1g00886 1005 SMART c2h2final6 829 856 IPR013087 -
Trre1g00886 1005 SMART c2h2final6 778 800 IPR013087 -
Trre1g00886 1005 SMART c2h2final6 659 683 IPR013087 -
Trre1g00886 1005 MobiDBLite consensus disorder prediction 746 769 - -
Trre1g00886 1005 SUPERFAMILY beta-beta-alpha zinc fingers 763 839 IPR036236 -
Trre1g00886 1005 SUPERFAMILY Cysteine proteinases 3 41 IPR038765 -
Trre1g00886 1005 ProSitePatterns Zinc finger C2H2 type domain signature. 661 683 IPR013087 -
Trre1g00886 1005 Pfam C2H2 type zinc-finger (2 copies) 780 880 IPR041661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00886 Trre-Chr1 6736567 6744367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00886 623 1005 C2H2 Transcription Factor Family AT4G31420 60.982 2.60e-151 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00886 K14816 - gmx:100796317 538.11