Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00885 ATGTTCGTAGTACAATGCTGTGCTGCTCAATATGTTGATACCGAGATAAAAACACAAAAACCGTACCACATCAAAATTGAAAAGACATCATTTTTATTTGTACCAATTGCGGTGTTTGTTTATTGGACGGATTGCATGGCAACTTGGAAAGGGGACGGTGTTTATCTTGGGCCTCAAAATATACTCAGTTTTTTCCTTCCTTCAGGAGAGTTGGTTGTCGGACACATGCTGACGGTTATTGGGTTTGGAACTGAAGTCATCAATGGACAACCAGTACCGTATTGGCTCATCCAAAACTCGCATGGTCCAGATTGGGGCCATAACGGGTATGGAAAATTTTCCATGAATATATGGGGCCCCGGAGGAAAGCCACTTATTTCAGACGGAGTTGTGCCCACCGTATTGGCCACTCCACAGCCTGCGTATCTTCAATCCGGTCCTACAACGAGGTATATCATGTCTAGAATAATACCTGCGTGGCGGGCAGGATCTGCGCGTGCTGATGACCAAGATGATGAAGCGCAAGCAGTGGTAAAGAAATTGGCTACCGCACCAAGCCAAGCACCCAAGAGGCCAAGTCAAGTCACTGATGCTGTTAATCTGGTCAACTGTATGGATCTGACAGAGGTTCAAGGCGGGGAGGTTGCAACTACCAATTTGCATTCTTGCAATGGTTCTGAATTTGTTCTGCAGCTTCATATGTCTCGTTTACAGGACCATGGTTCAAGGGAACTCCAAAAAGCAAATGCACGTCTTAGATTTGTATATTTCCCTTTCATAGAGGTAACAGAAATAAATAGCCTACAGCGGCTTGGTCGTCTCTTTCCAGAGGCTCGCTGGCCTTTACTTCCTTTTATGGACTATAGGAACAAAAGGGAGACTTATAAGGCAGGGATATTGAAGAGATGTTCCATGAGGGTTAAATGCTATGTTGAAACTGATGCTGGTTTTAAGCCTACTCAGTCAAAGACGGATTTAGCTCACCACAATCCTTTTACCATTGCTTTAAAGAACTTGGGCAGTAAAATCTCAGACAAAGAGACCGATGTTTCTGTTGAAATTACCAGGGATAAAAAAGTGATAACTCCTTTACAGCTAGAAAAGGAGTACCGGGAGTGGATATTACATATGCACAATGATTTTGATGTAGAAGCTGATGCCGGTGACTGTGAGGATAAACCGGTTATACTTCTCAATCCACCAAACAAGAAAGCACTTGGCCTTTCAAATGATGTCATCAGAGTTCATCGGGTTCTGAAGAGAAAGGAAAAGACATGGAGTAGTGGACAGAGAATTAAAGTGTTAAAGGGAGCATGCGCAGGGTGTCACAGCCAGAATGTTTATGCAACCATAGAGTACTTTTTGCTTGAAAATTTTGAAGGAGAGACGGGTGGAGATGCTCGGATCATATGCAGGCCAATCGGTATCCCAGAAGAAAATGGATGCTATCTTGATGTGAGTAATGAAGAAAACCCCACATTGGATATTGGTAGGGCTTTGTCTTTACCTATGACCGTGATTGACAACGAAAAGCTTGTACCTGTTGAAACTATTCAATGGGAAAATCGACTTAAAAAGATAAAACAGAAATCTCCTGCTTCTATTCCGGTCCCACACCATTATAATCGGAAGCAGGCTGATGTGGTGGATTCAATCAGTAGAAATTTTGACAAAAGGGTGACAGCAACACCTTCTCATTGTGCTGTGGAGTACAAACTTCTAACTGATGACCAATGTCAAGAGCTTGATGTGAGGGTTGGTTCTACCTTTCCAACCTTAGCCATTGCAGGTTATGACATCCATGGTAATCAAGCACCTTTTCAAGAAACTCCAGAGGATCTGACGGTTCAACTTCAGGCAGCAAAGGACTTGTACTTCAAAGTGCAAGGAATGTATATTGGTCTTTCAGTTGACAAAATGGCTTTACAAATCATGGATGCAATGGTTATAAGTAGTGAATTGGATAAGATAAGTCCTACCTATAGAGCTACTTTGATGATTACTTCAAAAAGTGTTCCATTGTCACTATCTTTTCCATGTCGAGTTTTTCCTAGTTCTGTCAAACACGTTGAACTGATACCTGAGATAACAGAAGAACAACTACATCCAGGATTCATTTTCAAGGAGTTAATGTTGGAGGTGGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTAGCTAGACAAGCTGCTCTTGCTCGAGAGAGAGATAAATCTAATGAAAGTCCTATGCTCCATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGCAGGCATCTGAAGGAGCTAGTCATTCAGATGGTAAGGCTATAATTAAGCCACTTCCACAACGCGTTGTGAATAAACCTCCTCCTAGAAGACTGGTATATATCTCTGCTGATGATGAAGAAAGTGAAGATGAATGGGTAGAGGTTGATTCTGATGATGATCTGCATGATGATGCTGCAAAGTCCTTGACAGATTTGAATGTGGATGAGAATGCTGATAATGATGATATGAACGAAGATGATGATGATGATGATGATGATGTTGTGGATTTGGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAAACATTAGAAAGCTGCATGGTTCACATGCACAAGCACCATGGGCTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTCACCTATCTTGGACTGAAGGTCAAAAGGGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATAGCAGCAAAAAATCACTGTAAAGTGCATTATGGTGACGATGACGATGAGGAGGAAGTAGAGCTGGAAGAGTTCTATGATTATACCAGCAGTTATTTTGATGAGCAAGGGAAGCAGCTAGTTGTATCCGGTGATGCTGATAACAATATAGAACTTAGTGATGGGTCTGAGCTTGTAATCACTAAGCTATCTGGTAACAAAAAATCAACCAGAACTCTAGGAAGCCGCGAATACCTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATAACGTTGCTGTTACTGCGGAATTGGCTGCAAGGTACCGGAGCATGGGTTTGGCCACTGTACAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGCGTGGAGCAAATGCGTCGCAAGATGGGAATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACCTATTAG 3279 0.4267 MFVVQCCAAQYVDTEIKTQKPYHIKIEKTSFLFVPIAVFVYWTDCMATWKGDGVYLGPQNILSFFLPSGELVVGHMLTVIGFGTEVINGQPVPYWLIQNSHGPDWGHNGYGKFSMNIWGPGGKPLISDGVVPTVLATPQPAYLQSGPTTRYIMSRIIPAWRAGSARADDQDDEAQAVVKKLATAPSQAPKRPSQVTDAVNLVNCMDLTEVQGGEVATTNLHSCNGSEFVLQLHMSRLQDHGSRELQKANARLRFVYFPFIEVTEINSLQRLGRLFPEARWPLLPFMDYRNKRETYKAGILKRCSMRVKCYVETDAGFKPTQSKTDLAHHNPFTIALKNLGSKISDKETDVSVEITRDKKVITPLQLEKEYREWILHMHNDFDVEADAGDCEDKPVILLNPPNKKALGLSNDVIRVHRVLKRKEKTWSSGQRIKVLKGACAGCHSQNVYATIEYFLLENFEGETGGDARIICRPIGIPEENGCYLDVSNEENPTLDIGRALSLPMTVIDNEKLVPVETIQWENRLKKIKQKSPASIPVPHHYNRKQADVVDSISRNFDKRVTATPSHCAVEYKLLTDDQCQELDVRVGSTFPTLAIAGYDIHGNQAPFQETPEDLTVQLQAAKDLYFKVQGMYIGLSVDKMALQIMDAMVISSELDKISPTYRATLMITSKSVPLSLSFPCRVFPSSVKHVELIPEITEEQLHPGFIFKELMLEVAGVPGVTEALFLARQAALARERDKSNESPMLHSCGLCGKGYKSEKAHAEHLKSRTHMMQASEGASHSDGKAIIKPLPQRVVNKPPPRRLVYISADDEESEDEWVEVDSDDDLHDDAAKSLTDLNVDENADNDDMNEDDDDDDDDVVDLDPSCCFMCDKEHKTLESCMVHMHKHHGLFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHIAAKNHCKVHYGDDDDEEEVELEEFYDYTSSYFDEQGKQLVVSGDADNNIELSDGSELVITKLSGNKKSTRTLGSREYLRYYRQKPRPSPANNVAVTAELAARYRSMGLATVQSREQLVRMKVLKQMNRSGVEQMRRKMGMKSNVIRNLPNNVTY 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00885 1092 ProSitePatterns Zinc finger C2H2 type domain signature. 748 770 IPR013087 -
Trre1g00885 1092 Gene3D Cysteine proteinases 4 119 - -
Trre1g00885 1092 SUPERFAMILY Cysteine proteinases 33 117 IPR038765 -
Trre1g00885 1092 ProSiteProfiles Zinc finger C2H2 type domain profile. 746 775 IPR013087 -
Trre1g00885 1092 MobiDBLite consensus disorder prediction 840 856 - -
Trre1g00885 1092 Pfam C2H2 type zinc-finger (2 copies) 867 967 IPR041661 -
Trre1g00885 1092 SUPERFAMILY beta-beta-alpha zinc fingers 850 926 IPR036236 -
Trre1g00885 1092 MobiDBLite consensus disorder prediction 833 856 - -
Trre1g00885 1092 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 225 547 - -
Trre1g00885 1092 Pfam Papain family cysteine protease 72 116 IPR000668 GO:0006508|GO:0008234
Trre1g00885 1092 SMART c2h2final6 746 770 IPR013087 -
Trre1g00885 1092 SMART c2h2final6 916 943 IPR013087 -
Trre1g00885 1092 SMART c2h2final6 865 887 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00885 Trre-Chr1 6736567 6744667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00885 710 1092 C2H2 Transcription Factor Family AT4G31420 60.982 1.78e-150 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00885 K14816 - gmx:100809141 538.11