Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00883 ATGGATGAAAGTGGTGTTGATGATGAGTTTAGGTGTATTACAACAAATGGGTCTGGTGGATGGAGGTGTAAAGAGAAAGCTTTACCTGGAAAAACTCAATGTGAGAAGCATCATGAGTATGATGCTGATAGAACCAAAATGAAAAAGGAAAGTAGTTCTGATGAAAAGAAAGGTACAAAAAGAAAAGGTGAAGAGTGTTTACAAAATGGGGTTGTTGCTGCTGATGATGGTAGTTTTGGAGGGATTTTTGGTGGAGATGAAGTCAATGGTGGTTGTGAAAGTTTTAATCTTTGGCAACAAGATGGTCAACAAGTTGGGGTTTTTAGTCAAGGGAGTGGAAATTTAGGTCAATTTCTTGGTGATGGAGTTGAGTTTGTAGGTGGGTTTGTTGAGGATAGGAATAGGGTTAATGGTGGTTTAGGTCAGCCATGGAGTAGTGTAGGTGTATTTGGAAATGCTGGTGGTGTTTCTGGTGTTGGTAAAGAAGATAATAGAAATGGTATTGATGGTGTTTGTGGAAATGGTTCACTTGGTTTTCCTTCTGGAGGAATTGGAGGGTTGGTTGGTGGTGAAGCTGGTTTTGGGGATATGTATGATAGTAGTTTTCAAGCACTTCTTAGTCAAGGTAGGGTTTGTGATGATGTGAATTTAGTTGTTGATGGAACTAGTTTTCAAGGGTTAGGTGATGTAAATGCTTATGATTTTAGAGGTGAGGGTGGTGGGGGTGTTAGAAATGTAGTTCAGTGTGGCGGCAAATTTGAAGGCGAAAAAAATGTTGGTAGTATATTAGAGGTTCCTGACTCAAGTAACAAGGTGAAAGATATTAGCGTGGAAGAGGGAACGGAACTGTTATTAAGTGGAGGAGTTTCTGTCAATAATGAGGCAACTGATGTTTTGAAGCCATTGACTAAGAGAGCAGGAAGGCCTAAGGGTTCTAAGAATAAGAAGAAAGGGGTTAACTTCGTCTCGGATGGAGAAACTGTTTGTGGAAGTGGTAACGGTGGAGTGATTGGGACGAGCACTGTTTGTGGAAGGCCTAAGGGTTCCAAGAATAAGAAGAAAGGGGTTAACTTAGCTTCGGATGGAGAAACTGTTTGTGGAAGTGGTAATGGTGGAGTGATTGGGACGAGCACTGTTTTTGGAAGGCCTAAGGGTTCCAAGAATAAGAAGAAAGGGGTTAACTTAACCTCGGATGGAGAAACTGTTTGTGGTAATGCTGGAGCGATTGGGACAAGCACTGTTGAAGTTTTAGAGAATGAAAAATCACCGTGTTGTGGTAAGGCTGGTCAGGAAGCTGTGGCCGAGGATGAGATTGCAAGGACAAAGAAGCGTGGTCAACCGGATGATTGGAAGCGTGGAAGGGAGATTATTTTGGCGGTTGGTTATGAAGTTGCTGGGTATGGTGACATTACAGAACCAACAAAGCGTGGTAGAAGATCAAAGGGTTCGGTAACCAAGGAGAAGAATGCCGAGATTGCAGTAACCAATATTTGTGCTTCTAGTAACGAAGGAGCTGAGGAGATTGCAACACAAGGTTTAGAAACCAAAATGATGAGCGTTCCATGTCAAAAAGGTGCAGACGAGGTTGCAAGCCTAACTAAAAAACTTGGTCCTGCATTGTGTACAAGGAATAAATTGAGAAGCATTGGATTTGAGGGTTATGAGCATCCAGGAATGTCTAGTGATGTTTGTCTTGAAGATGATGATGGAACTGCAAATGTTTTGCCAACCCTTGGTCAAGACGAGGTTCAAAATGTTAAACCAAAAAGGGGTCGACCAAAGGCGTCTAAAAATAGGAAGAAAAATATTGCTGGTGAAGCTGAAAACGAGTTGCATAAGGAGAAAAAAAGGCGTGGTAGGCCAAAGGGTTCTGGAGAAAAGCAAAAGGAGATTGTTGTTCAATCGGATTCGAAGATTGAAAGGCGTGGTAGGCCAAAGGGTTCCGGGAAAAAGCAAAAGAAGGCTGCGGCTCGATTGGCTTCACAGATTAAAAGTCAGAAGAGTACTTGTGTTGATGGTGTTTTGAGTATGAATGAAGAATCCATTTCACCGCCAGAAGGTCAAGTAAATAAAGAAGAAAAGTCAGATTTTGTGCCGGAGTGCTCAAAGGATTCCAGAATTGAAAAGAGAACAAAAGGATTGATGAGTGCATCCAGCAATGTCCATAAGAGGTGCAGTGAAAGACTAAGAACATTGCAAACTGACCACAAGAATTATCAAGATTTTGAAGTGGAAGAAACTTTTTCTGAAAATGAGGTGGAAGAAACTTTTTCTGAAAATGAGGTGGAAGAAACTATAGACCATGATGGATTGGAATCTACAGATTTGATGGGTGACATAGAGATAAAAAAGGAGCGTAGAAATTCAAGGTGCCATCAGTGCTGGAAGAAAAGTAGGACTGGTCTCGTCGTTTGTACCAAGTGCAAAAGAAAGAAATATTGTTACGAGTGCATAGCAAAATGGTACCAAGATAAGACTAGAGAGGAGATAGAGACCGCTTGCCCTTTTTGTCTTGATTATTGCAATTGCCGACTGTGCTTGAAGAAAACTATATCTACAATGGATGAAAATGGTGAAGCAGATAGAGATGCCAAATTACAAAAATTGCTTTTCTTGCTTAAAAAAACATTGCCCTTACTCCAATATATCCAACGGGAGCAGAAATCAGAATTGGAAGTAGAAGCAAGCATACACGGTTCTCTGATGGTGGAAGAGGAGGATATTCTGCAGGCAGCAGTTGATGATGATGATCGAGTCTATTGTGACAACTGCAGTACATCCATTGTCAATTTCCACAGAAGTTGTACCAATCCTTATTGTCGGTACGATCTCTGTCTCACTTGTTGCACGGAACTAAGAAATGGAGTTCATTGCGAATATATTCCTGCTATTGGTAATGAGGAAATGGTCGATACACCACCCGAAACTATTGCTTGGAGAGCAGAGACAAATGGTAGCATTCCTTGCCCTCCAAAAGCTAGAGGAGGTTGTGGTACTGCTACCCTTTCACTGAGGCGCCTATTCAAACCTAATTGGATTGACAAATTGACCAAGGGCGCAGAGGAACTTACAATCAAATATATCCCACCCATTGTTGATCTTTCTCTAGGATGTTCAGAATGCCATATTTTAGAGGAAGATGCAGCACATGATTCTGCAAGGAAGGCAGCTTCTAGAGAAACCGGTCATGACAACTTTTTGTACTGTCCAGATGCCGTTGAAATCGGAGACACAGAATTTGAGCATTTCCAAAGACACTGGATAAGAGGCGAACCTGTTATTGTAAGGAATGCTTATAAAAAGGCTACTGGCCTTAGCTGGGACCCAATGGTGATGTGGAGAGCTTTTAGGGGGGCAAGGAAAATATTAAAAGAGGAGGCAGTTACTTTTAAAGCTATCGACTGCTTGGATTGGTGCGAGGTACAAGTTAACGCCTTTCAGTTCTTCAAAGGCTACTTGACAGGGCGTCATTACAGAAATGGATGGCCGGAGATGCTGAAGCTAAAAGATTGGCCTCCATCAAATTTTTTTGAAGAGTGTTTGCCAAGGCATGGTGCTGAGTTTACAGCAATGCTTCCTTTTAGTGATTATACACATCCCAAATCCGGTGTTTTAAACCTCGCCACAAAGCTCCCTGCTGTTTTGAAGCCAGATTTGGGTCCTAAAACATACATTGCTTATGGAGCTTTAGAAGAGTTGAGTAGAGGTGATTCTGTGACAAAACTACATTGCGACATTTCAGATGCAGTCAATATTCTGACACACACAGCTGATGTAAAGACACCAACATGGCAATCCAGAATTATAAAAAAGTTAAAGAAGAAGTACGAAGTTGAAGATATGCGCGAGCTCTATGGTCAAGACATTAAGGCAGCTGGTTCATGTGGAAGAAAACGCAGAAAGTGTCGCATAGGTAATGCCGTGGATCCTAAAATCCCTGAAAAAGAAGAAGACATCAGGGGTAGAGACTCAACCTTACTTGGAAGTCAAGGAAAAGAAGAGAAACTTGATGCAAAAGCTTGTGTTCAAGAATTCTCCGAACCCAGCAGAAGTATATTAGATTTAAATGTGAGTGAACAGGAAATCTTTGATCCACCAAGGCTTCAGCAATTTGATCTCAATAGTCACGATTCCAGTTTCTTGGTTCCTGGAAATGATTGTGAGTTGATGCATTATGATAATGCGGAAGAACAACGGTGCTCACCACCAGGTGATGAATCTTGTAAAGGAATTTCACCAGGTATTGATAATCAACCTTGTAGTGAAACAAAAGAAACAGAATTTGTCAATGGATTAGATTCTTCAGATGAGTCCAGTTCGGATATTGAGACTGACAAAATAGAGTCAGTTGAAAATGACATATCGGGTAATGATGTTCATTTGGAGACTCAATACGGGAGTGCTGTGTGGGACATATTCCGTAGGCAGGACGTACCCAAACTAAGGGAGTACCTAACTAAACACTTTAGAGAGTTTCGTCACGTAACTAGTCTTCCAGTGAGTTATGTGATTCATCCTATTCATGACCAGCACCTTTACTTAAATGAAAAGCACAAAAAGCAACTCAAGCTAGAATATGGTGTTGAACCGTGGACTTTTGAGCAATATCTTGGCGAAGCTGTTTTCATACCTGCAGGATGTCCACATCAAGTGAGAAATAGAAAGTCTTGCATAAAAGTGGCCATGGACTTCATTTCTCCTGAGAATGTTCAGGAATGTGTTCGATTGACAGAAGAATTTCGCTTACTTCCAAAAAACCATAGATCTAAGGAAGATAAATTAGAGATAAAGAAGATGGCACTATATGCTGCTGATGTTGCTATTGCTGAAGCCACTGAGCTCGTGGGAGCGAAATGA 4857 0.4132 MDESGVDDEFRCITTNGSGGWRCKEKALPGKTQCEKHHEYDADRTKMKKESSSDEKKGTKRKGEECLQNGVVAADDGSFGGIFGGDEVNGGCESFNLWQQDGQQVGVFSQGSGNLGQFLGDGVEFVGGFVEDRNRVNGGLGQPWSSVGVFGNAGGVSGVGKEDNRNGIDGVCGNGSLGFPSGGIGGLVGGEAGFGDMYDSSFQALLSQGRVCDDVNLVVDGTSFQGLGDVNAYDFRGEGGGGVRNVVQCGGKFEGEKNVGSILEVPDSSNKVKDISVEEGTELLLSGGVSVNNEATDVLKPLTKRAGRPKGSKNKKKGVNFVSDGETVCGSGNGGVIGTSTVCGRPKGSKNKKKGVNLASDGETVCGSGNGGVIGTSTVFGRPKGSKNKKKGVNLTSDGETVCGNAGAIGTSTVEVLENEKSPCCGKAGQEAVAEDEIARTKKRGQPDDWKRGREIILAVGYEVAGYGDITEPTKRGRRSKGSVTKEKNAEIAVTNICASSNEGAEEIATQGLETKMMSVPCQKGADEVASLTKKLGPALCTRNKLRSIGFEGYEHPGMSSDVCLEDDDGTANVLPTLGQDEVQNVKPKRGRPKASKNRKKNIAGEAENELHKEKKRRGRPKGSGEKQKEIVVQSDSKIERRGRPKGSGKKQKKAAARLASQIKSQKSTCVDGVLSMNEESISPPEGQVNKEEKSDFVPECSKDSRIEKRTKGLMSASSNVHKRCSERLRTLQTDHKNYQDFEVEETFSENEVEETFSENEVEETIDHDGLESTDLMGDIEIKKERRNSRCHQCWKKSRTGLVVCTKCKRKKYCYECIAKWYQDKTREEIETACPFCLDYCNCRLCLKKTISTMDENGEADRDAKLQKLLFLLKKTLPLLQYIQREQKSELEVEASIHGSLMVEEEDILQAAVDDDDRVYCDNCSTSIVNFHRSCTNPYCRYDLCLTCCTELRNGVHCEYIPAIGNEEMVDTPPETIAWRAETNGSIPCPPKARGGCGTATLSLRRLFKPNWIDKLTKGAEELTIKYIPPIVDLSLGCSECHILEEDAAHDSARKAASRETGHDNFLYCPDAVEIGDTEFEHFQRHWIRGEPVIVRNAYKKATGLSWDPMVMWRAFRGARKILKEEAVTFKAIDCLDWCEVQVNAFQFFKGYLTGRHYRNGWPEMLKLKDWPPSNFFEECLPRHGAEFTAMLPFSDYTHPKSGVLNLATKLPAVLKPDLGPKTYIAYGALEELSRGDSVTKLHCDISDAVNILTHTADVKTPTWQSRIIKKLKKKYEVEDMRELYGQDIKAAGSCGRKRRKCRIGNAVDPKIPEKEEDIRGRDSTLLGSQGKEEKLDAKACVQEFSEPSRSILDLNVSEQEIFDPPRLQQFDLNSHDSSFLVPGNDCELMHYDNAEEQRCSPPGDESCKGISPGIDNQPCSETKETEFVNGLDSSDESSSDIETDKIESVENDISGNDVHLETQYGSAVWDIFRRQDVPKLREYLTKHFREFRHVTSLPVSYVIHPIHDQHLYLNEKHKKQLKLEYGVEPWTFEQYLGEAVFIPAGCPHQVRNRKSCIKVAMDFISPENVQECVRLTEEFRLLPKNHRSKEDKLEIKKMALYAADVAIAEATELVGAK 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00883 1618 ProSiteProfiles WRC domain profile. 6 52 IPR014977 -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 686 703 - -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 680 703 - -
Trre1g00883 1618 SUPERFAMILY Clavaminate synthase-like 1079 1609 - -
Trre1g00883 1618 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 436 1615 IPR045109 GO:0032454|GO:0033169
Trre1g00883 1618 ProSiteProfiles Zinc finger RING-type profile. 791 837 IPR001841 -
Trre1g00883 1618 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 787 850 IPR018866 -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 28 65 - -
Trre1g00883 1618 Coils Coil 1617 1618 - -
Trre1g00883 1618 Coils Coil 597 617 - -
Trre1g00883 1618 Gene3D Cupin 1069 1314 - -
Trre1g00883 1618 Gene3D Cupin 1420 1590 - -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 575 668 - -
Trre1g00883 1618 SMART cupin_9 1181 1581 IPR003347 -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 599 643 - -
Trre1g00883 1618 ProSiteProfiles JmjC domain profile. 1188 1581 IPR003347 -
Trre1g00883 1618 MobiDBLite consensus disorder prediction 28 64 - -
Trre1g00883 1618 Pfam JmjC domain, hydroxylase 1455 1564 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00883 Trre-Chr1 6707049 6714651 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g00883 JmjC 4.5e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00883 K15601 - lang:109335468 1240.71