Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00882 ATGGATTTGGATAGCATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATTCACATCCACATCATCATCATCACACTGAGTTTTCTTCCTTGAAACCTCGTAATGGAAATAATAATCATCATGTTGTTGGTTCTACAGTTATTGCTCCTGCAACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGTCACACATTATGTTCGACATGTAAAACAAGGGTGCACAATCGATGCCCGACTTGTAGACAAGAGCTCGGAGATATTAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTTGAGTTACCATGCAAGTACTATTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGATGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTCCCTACCTCGTTGCGCATTTGAGGGATGACCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGCGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTGTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTATAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTCATTTGGGAGGGAACACCACGGAGTATCCGTGATAGCCACCGTAAAGTTCGAGATAGCCACGACGGTCTCATAATTCAACGAAATATGGCCCTCTTTTTCTCTGGTGGTGATAGGAAGGAACTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAAAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGCAACTGA 996 0.4277 MDLDSIECVSSSDGMDEDEIQHRILHSHPHHHHHTEFSSLKPRNGNNNHHVVGSTVIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEMICNFRPYTCPYAGSECSAVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00882 331 ProSiteProfiles Zinc finger SIAH-type profile. 122 182 IPR013010 GO:0008270
Trre1g00882 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 316 - -
Trre1g00882 331 SUPERFAMILY RING/U-box 61 109 - -
Trre1g00882 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 178 310 - -
Trre1g00882 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 121 IPR013083 -
Trre1g00882 331 FunFam E3 ubiquitin-protein ligase SINAT3 121 177 - -
Trre1g00882 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 120 - -
Trre1g00882 331 SUPERFAMILY TRAF domain-like 122 314 - -
Trre1g00882 331 Pfam Seven in absentia protein family 111 310 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre1g00882 331 CDD Sina 183 311 - -
Trre1g00882 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
Trre1g00882 331 ProSiteProfiles Zinc finger RING-type profile. 69 105 IPR001841 -
Trre1g00882 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 310 IPR008974 GO:0005515
Trre1g00882 331 CDD RING-HC_SIAHs 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00882 Trre-Chr1 6701596 6705237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00882 60 317 C3H Transcription Factor Family AT2G41980 80.620 7.79e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00882 K04506 - jre:109007585 639.032