Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00881 ATGGACTTTGATAGACTTGGACCGTCCGATCCAGGTGGTTCATCACGTCGCTCCACCGCACCTCTAACAAACTCCACCACATCAAATTCATCTCAAAAAAATAAAAAACTCATCATGATTTCAATCCTCGCCGCTTCTTTAATCATTGCCTCCGCCATCTCCGCCGCACTAATCACCGTAGTCCGTTCCCGCGCTTCATCCAATGATCAAAGTTCCCCGAACCACCGCGCCAAACCAACTCAAGCAATCTCCCGAACCTGCAGCAAAACAAGATTCCCCACACTTTGCATAAACTCCCTCCTTGATTTCCCCGGCTCCACCGCCGCCAACGAGCAACAACTAGTCCATATCTCATTCAACATGACACATCGTCACATCAGCAAAGCACTCTTCGCCTCCTCAGGCCTCTCATATGCAGTCGCGAACTCAAAAGTTCGTGCTGCATACGAGGATTGCCTGGAATTAATGGACGAATCCGTGGACTCAATCAGAATGTCCATGGATTCACTAACCACCATGTCATCAACTCTATCCCGCGCCGACGAATTATCAACCGTTGCGGGATCAGAGGATGTGATGACATGGCTGAGCGCGGCGTTAACCAACCAAGACACATGTCTGGAAGGATTTGAAGACATTAGCGGCACCGTTAAGGATCAGATGGTTGATAATTTGAAGGATTTATCGGAACTCGTGAGTAATTCTCTCGCGATATTTTCAGGGAGTGGAGATTACGATTTTACTGGTGTGCCGCCGATACAGAATAAGAGACGGTTATTGGGAATTGAGAAAGGAGAAAATGATGATGATGTTGTCGGCGATATCTCGCGAGAATTTCCGAAATGGCTTAAGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATTCAAGCTGATATTATCGTTTCGAAAAGTGGTAACGGAACGGTGAAGACAATTACTGAAGCGATTAAGAAAGCGCCGGATCATGGTAGCCGTCGGTTCATAATCTATGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTGGGAAAAAAGAAAACAAATATTATGTTTATAGGAGATGGGACGGGCAAAACTGTAATTACAGGAAAAAGAAGTGTTGGAGATGGAATGACTACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTCCTGGTTTCATGGCACGTGACATCACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCGGTGGCGCTCCGTGTCGGAGCAGATCACGCGGTGGTGTATCGCTGCAACATTATTGGGTACCAAGATGCATGCTATGTGCACTCAAACCGTCAATTCTTCCGCGAATGCAACATTTATGGCACCGTAGATTTTATATTTGGAAATGCTGCGGTTGTTTTTCAAAAGTGCAACATTTATGCTCGTAAGCCGATGGCCCAACAAAAGAACACTATCACGGCCCAAAATAGAAAAGACCCAAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTACCAGCCCCAGATCTAGCCTCATCAAAGGGTAGCATTGAAACATATTTGGGTCGTCCGTGGAAAATGTATTCTAGGACCGTTTATATGTTGTCCTATATGGGTAATCACGTGCATCCACGCGGATGGTTAGAATGGAATGGAGATTTTGCTTTAAATACATTGTATTATGGTGAGTACATGAATTTTGGGCCGGGTGCAGCTGTTGGACAACGGGTCAAATGGCCTGGATACCGAGTCATTACTTCAACTGTGGAGGCCAATAGATACACCGTAGCCCAATTCATCTCCGGTTCATCGTGGCTACCATCTACTGGAGTGGCATTTTTGGCCGGGCTATCCACTTGA 1848 0.4594 MDFDRLGPSDPGGSSRRSTAPLTNSTTSNSSQKNKKLIMISILAASLIIASAISAALITVVRSRASSNDQSSPNHRAKPTQAISRTCSKTRFPTLCINSLLDFPGSTAANEQQLVHISFNMTHRHISKALFASSGLSYAVANSKVRAAYEDCLELMDESVDSIRMSMDSLTTMSSTLSRADELSTVAGSEDVMTWLSAALTNQDTCLEGFEDISGTVKDQMVDNLKDLSELVSNSLAIFSGSGDYDFTGVPPIQNKRRLLGIEKGENDDDVVGDISREFPKWLKKRDRRLLSLPVSEIQADIIVSKSGNGTVKTITEAIKKAPDHGSRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGTGKTVITGKRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNIIGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGSIETYLGRPWKMYSRTVYMLSYMGNHVHPRGWLEWNGDFALNTLYYGEYMNFGPGAAVGQRVKWPGYRVITSTVEANRYTVAQFISGSSWLPSTGVAFLAGLST 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00881 615 NCBIfam pectinesterase inhibitor domain 54 239 IPR006501 GO:0004857
Trre1g00881 615 ProSitePatterns Pectinesterase signature 2. 446 455 IPR033131 -
Trre1g00881 615 SUPERFAMILY Pectin lyase-like 298 612 IPR011050 -
Trre1g00881 615 PANTHER PECTINESTERASE 50 603 - -
Trre1g00881 615 MobiDBLite consensus disorder prediction 12 30 - -
Trre1g00881 615 Gene3D - 295 613 IPR012334 -
Trre1g00881 615 CDD PMEI-like_3 87 240 - -
Trre1g00881 615 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 241 IPR035513 -
Trre1g00881 615 Pfam Pectinesterase 301 598 IPR000070 GO:0030599|GO:0042545
Trre1g00881 615 SMART PMEI_2 78 238 IPR006501 GO:0004857
Trre1g00881 615 FunFam Pectinesterase 295 613 - -
Trre1g00881 615 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 240 IPR035513 -
Trre1g00881 615 Pfam Plant invertase/pectin methylesterase inhibitor 82 238 IPR006501 GO:0004857
Trre1g00881 615 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00881 Trre-Chr1 6694275 6697913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00881 1 614 Carbohydrate Esterase AT5G53370 61.912 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00881 - - gmx:106796002 922.924