Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00876 ATGTTTGCAGAAACTGGTCTTCTCTTCCCTTATTTACAGAATTACTCTCAAGAGTTTCAACAACTTGAAGAATATTGCATGACTCAAAAGTCCAATGCTTCAATGAGTGACCTAGTTCAATCATCTGCAATGTCGGAATTTGATTTATTTGTTGAGGGAGATTTGTTCAAAGCGCCCGAGACGATTATGGAAGAACCGGCGATGGATCTTGATCCAATGCAAGCAGCTATGTCAATGATATCTTGTGGGGAAAATGTGTCGTCACAAGGTCTAAAATCTTCGGAGATTGATGATGTGCTTCAAAATGAACAGCTTTTGAGTGAGGTATACTATGAATGCAAAAAGGATCTGTTAGAAAAGGCGGCTATTGAGTCACCTCTTTCTGAAATTCTTGAAATCAAGATTCCTGCTCTGAACATCGACGAGAATTCGATTCAAGAAAACAAACCAATTCCTGATGTACTATTACCGAAGAGTGTCAGTTCGGGAAGTTTGAATTCAATGGATTGGAGGATGAACGGAGCTGCAATGAAGCCTGCTTTTCTTGATTTCCCTGGAATTGATTTCAGCGCGGTTTATGGAATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGGTAACTTGAGTGTTGGCCAATTGACTCTCGAGAGGCCTTTTCTTCTCAGCAACTGCACGAGCGAGCAACGTCAAGAAAAACTCTCTAGATACAGGAATAAGAAGACAAGGCGAAACTTTGGGAGGAAAATCAAGTATGCCTGCAGGAAAGCGCTCGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAATATGATGTCAAAAGGCAATGA 852 0.4143 MFAETGLLFPYLQNYSQEFQQLEEYCMTQKSNASMSDLVQSSAMSEFDLFVEGDLFKAPETIMEEPAMDLDPMQAAMSMISCGENVSSQGLKSSEIDDVLQNEQLLSEVYYECKKDLLEKAAIESPLSEILEIKIPALNIDENSIQENKPIPDVLLPKSVSSGSLNSMDWRMNGAAMKPAFLDFPGIDFSAVYGMRRAFSEGDIKTLGNGNLSVGQLTLERPFLLSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEEYDVKRQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00876 283 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 164 275 IPR045281 GO:0009909
Trre1g00876 283 Pfam CCT motif 233 275 IPR010402 GO:0005515
Trre1g00876 283 ProSiteProfiles CCT domain profile. 233 275 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00876 Trre-Chr1 6644721 6648331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00876 208 277 C2C2-CO-like Transcription Factor Family AT5G57660 43.056 5.70e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g00876 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00876 - - aprc:113853022 461.84