Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00875 ATGATAATTAAGAAGAATCTCAAATCGGAAATGCCGAGTCGGAAACGGAGTAGACTCGGTAACTCGGAGGAAGAAGAAGATGAGTCAAAGTTGACTCAGATGAAGAATAAGAAGAAGAAAAGTAACGGTAATTATCCGTTAAATCTTCTCGCCGGTGCAATTCCGGCTAGTATTAAGGGATTACTCGGTGCAATTCCGGCAACCACCGTTGCATCATCGGAAAATTGCTTTTCCGTATCTAACGGAAAAACTGATATTAAGAACGCGGCGACTGGAACACGGCCACCGCTTGTTCGAACATCGCGCGGCAGGCTTCAAGTGTTGCCGTCGCGGTTTAGTGATTCTGTTATTGTGAATTGGAAGAAGGATGCAAGGAATGGTGGTGGTGGTGGTGCCGGTGCCGGCACGGCTGCCACAAGCTTTCGTGAATTTGAATTTGATGAATTCAGTATGAAGAACTGTGGCGGAAAAGGAAAGAATGGTGCAAGTGCAACTTCGGGTCGCCGCGGGTATTCGGTATTGTGTGAGGAAGTGTTGCATAAGAATTTTGGTGCTGCTAACAATAAGGAATTGAGTTTGCGTGAGATTTTTGAGGAAACAAAGTTGAATAATGAAGTTTTGAAGAAGGAAGAGAAGAAAAAGAAGAAGAAAGAAGGGTATTTTGGGCCAGAAGATTTTTATGCAGGTGAAATAGTGTGGGCTAAAGCTAATAAAAAGGAACCATTTTGGCCTGCATTTGTTCTTGAACCAATGTCTCAAGCACCTGAGCTTGTTTTAAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGATACTCTAAGAATGAAAATCACAGGGATTTTGCATGGGTGAAGTGTGGAATGATTTTTCCATTTATGGATAATGTAGACAGGTTTCAAGAGCAGTCTGAATTGAGTTACTGTGATTCATCGCAATTTCATGCGGCAATTGAGGAAGCGTTTTTGGCTGATCAGGGGATTGTGGAGAATATTATAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTAATGATTCTATTCTTAAAGAGTTTCAGAGTGTCAGTGCTTCAAAACGGAATGCGGATCTTGTTCAGAAGGATTCATTTAACAGAAAGAAAAACATGCGACTTTGTGATGAATGTGGATTGGACCTTCCTTTCAATATGTCAAAGAAAACAAAGGATTTGACTCCTGGTGGTCAACTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCTAGCATCCTTTTCAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCATATCCAAAAGTCAAATGGAACAAAAACAATGGGCAGGTAGAACTTCCAAAGAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCATTTAGTAATGTGCAAGTGTGGTTTTTGTGACACTGAAAAGCAAGCACTCAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAAAACAAGTATTCAGGTTAAAGGATCTATGCTATCGCTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTATAGTTTCTGCCAAACCTAAAAGACCATCCACGAAAGCAAGAAAGCATAAATTGCTTACCTTTCTACAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTATATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATAATCTGTGTCAGATGTCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGACATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATTGATCCATTATGGGTTCATGTGACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGTTCGTGCACACAATGTGTCAAGTGTTCCACATTTTTCCATGTCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTGTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTAATGGGGTCATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCATCGAACAGAATAAAGGTAGAAGAAACTCCTCCAGTAGATAACACCGAACATGATCCATTTTCTGCTGCTAGGTGCCGGGTCTTTGTAAGAACAAACCACACAAAAAAGAGGGCAGCTGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTGCCATCATTCTTTAGATGAAATACAGAGATTAAATGCATGCAAAGTGGTAGATGAGTCTCGGACATTTTCATCTTTTAGGGAGCGCCTTCATCACTTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGTCTATTTGCACGAAAAAATATTCAAGAAGGAGAAATGGTCCTTGAATATCGCGGTGAACAAGTAAGGCGTAGCGTTGCTGATCTACGGGAGGCACGTTATAAATTAGAAAGGAAAGACTGCTATCTGTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCACGACTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTGGGTCATGATGAGAGCCGGATCGCACTCATTGCGAAGACCAACGTATCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG 3144 0.4062 MIIKKNLKSEMPSRKRSRLGNSEEEEDESKLTQMKNKKKKSNGNYPLNLLAGAIPASIKGLLGAIPATTVASSENCFSVSNGKTDIKNAATGTRPPLVRTSRGRLQVLPSRFSDSVIVNWKKDARNGGGGGAGAGTAATSFREFEFDEFSMKNCGGKGKNGASATSGRRGYSVLCEEVLHKNFGAANNKELSLREIFEETKLNNEVLKKEEKKKKKKEGYFGPEDFYAGEIVWAKANKKEPFWPAFVLEPMSQAPELVLRSCIADATCVMFLGYSKNENHRDFAWVKCGMIFPFMDNVDRFQEQSELSYCDSSQFHAAIEEAFLADQGIVENIIEDINAVAGNNGCSNDSILKEFQSVSASKRNADLVQKDSFNRKKNMRLCDECGLDLPFNMSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSYPKVKWNKNNGQVELPKKVTVLCNGVEGIYFPSLHLVMCKCGFCDTEKQALSEWERHTGSKFRNWKTSIQVKGSMLSLEQWMLQLAEFHAKAIVSAKPKRPSTKARKHKLLTFLQDKYEPVCAKWTTERCAICRWVEDWDYNKIIICVRCQIAVHQECYGARHVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTFFHVMCASRAGYRMELHCSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPNGVISTKILIQNKRKVGSRLISSNRIKVEETPPVDNTEHDPFSAARCRVFVRTNHTKKRAADEAIPHKVRGHCHHSLDEIQRLNACKVVDESRTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARKNIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00875 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 475 IPR013083 -
Trre1g00875 1047 CDD PHD_ATX3_4_5_like 614 660 IPR042011 -
Trre1g00875 1047 ProSiteProfiles Zinc finger PHD-type profile. 418 474 IPR019787 -
Trre1g00875 1047 SMART set_7 905 1028 IPR001214 GO:0005515
Trre1g00875 1047 Pfam SET domain 916 1021 IPR001214 GO:0005515
Trre1g00875 1047 Pfam PHD-finger 627 661 - -
Trre1g00875 1047 MobiDBLite consensus disorder prediction 1 44 - -
Trre1g00875 1047 Pfam PWWP domain 229 322 IPR000313 -
Trre1g00875 1047 SMART PostSET_3 1031 1047 IPR003616 -
Trre1g00875 1047 CDD PWWP_AtATX3-like 227 328 - -
Trre1g00875 1047 Pfam PHD-zinc-finger like domain 668 780 - -
Trre1g00875 1047 SUPERFAMILY FYVE/PHD zinc finger 613 677 IPR011011 -
Trre1g00875 1047 CDD PHD_TCF19_like 421 471 - -
Trre1g00875 1047 CDD ePHD_ATX3_4_5_like 669 780 IPR041955 -
Trre1g00875 1047 FunFam Histone-lysine N-methyltransferase 879 1047 - -
Trre1g00875 1047 SUPERFAMILY SET domain 897 1044 IPR046341 -
Trre1g00875 1047 CDD SET_SETD1-like 892 1043 - -
Trre1g00875 1047 ProSiteProfiles Post-SET domain profile. 1031 1047 IPR003616 -
Trre1g00875 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 663 IPR013083 -
Trre1g00875 1047 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 781 IPR034732 -
Trre1g00875 1047 PANTHER PHD FINGER PROTEINS 44 508 - -
Trre1g00875 1047 SUPERFAMILY Tudor/PWWP/MBT 220 325 - -
Trre1g00875 1047 Gene3D SET domain 803 1047 IPR046341 -
Trre1g00875 1047 Pfam PHD-finger 420 473 IPR019787 -
Trre1g00875 1047 SMART PHD_3 725 781 IPR001965 -
Trre1g00875 1047 SMART PHD_3 420 472 IPR001965 -
Trre1g00875 1047 SMART PHD_3 614 661 IPR001965 -
Trre1g00875 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 782 IPR013083 -
Trre1g00875 1047 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1047 IPR025780 -
Trre1g00875 1047 SUPERFAMILY FYVE/PHD zinc finger 419 476 IPR011011 -
Trre1g00875 1047 ProSiteProfiles SET domain profile. 905 1022 IPR001214 GO:0005515
Trre1g00875 1047 FunFam Histone-lysine N-methyltransferase 664 783 - -
Trre1g00875 1047 Gene3D - 223 328 - -
Trre1g00875 1047 ProSiteProfiles PWWP domain profile. 228 297 IPR000313 -
Trre1g00875 1047 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Trre1g00875 1047 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00875 Trre-Chr1 6630847 6640480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00875 615 780 C2H2 Transcription Factor Family AT3G14740 34.286 1.39e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g00875 zf-HC5HC2H_2 4.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00875 - - gmx:100775276 1546.18