Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00850 ATGCAAAAGGACAAGGAAGTTGTTAGCAAGGAAGGGAAAGAAATGGAAACAGAAGGAACTCGTGCGAAAGAAGAAACCCTACCTCCCGGATTTCGATTTCATCCAACCGATGAAGAACTTATTACTTACTATCTTGTAAACAAGATTTCAGATTCCGATAATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAGTGCGAGCCATGGGAGCTTCCGGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTTTTCAGCTTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAATAGTGTTACATCTGAATTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTAGAGCTCCTAGAGGAGAAAAATCCAACTGGGTCATGCATGAATACCGTATTCATTCAAAATCAAGCATCAGAACCAACAAGCAAGATGAATGGGTGGTTAGCAGGGTTTTCCGGAAAAGTGCAGGTGCAAAGAAATACCCTTCATCAAACCCTACAAGATCAGTCATGATGAATCCTTACAATATTAATCTAGAAGTTGCTCCTCCTAACTTCAATAATAATATGCCACCACCACAAATGATGCAGTTAGGACTTGATTCTGCAACTCATTTCCAGCTCTATGGAAGAAACTACATCAACACTGCAGAAGTTCTAAGAGCTGGTGGTATACCAATGCAGCAATATTCCAATTTGAATTTTCCAGTATCATCATCATCATCTTTAGGAGTTGGAGATGTTGGAGGATTCACTATTTCAGGACTTAATTTGAATCTTGGTGGATCAACTTCTTCACAACCTATTTTGAGGCCAATGCCATCAACTGTTCAGAATAATATGCATGATTTCAGTTCCAACATCATGATGACGGGTGCAAATAGTAATATTCAGCTTGCTGCAGAGAATAATAATAATAATAATAATAATAATAATAATCATAATGTAGGGTATGGTGGAGGAGATCAAGTGAATAATGCAAACCCTAATAGGTACAATATGCAAGGTACTATGGATCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTATTGA 1128 0.3803 MQKDKEVVSKEGKEMETEGTRAKEETLPPGFRFHPTDEELITYYLVNKISDSDNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSNPTRSVMMNPYNINLEVAPPNFNNNMPPPQMMQLGLDSATHFQLYGRNYINTAEVLRAGGIPMQQYSNLNFPVSSSSSLGVGDVGGFTISGLNLNLGGSTSSQPILRPMPSTVQNNMHDFSSNIMMTGANSNIQLAAENNNNNNNNNNNHNVGYGGGDQVNNANPNRYNMQGTMDHCVDLDHYWPPSY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00850 375 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g00850 375 ProSiteProfiles NAC domain profile. 27 177 IPR003441 GO:0003677|GO:0006355
Trre1g00850 375 Pfam No apical meristem (NAM) protein 28 155 IPR003441 GO:0003677|GO:0006355
Trre1g00850 375 FunFam NAC domain-containing protein 100-like 36 181 - -
Trre1g00850 375 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Trre1g00850 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 309 - -
Trre1g00850 375 Gene3D NAC domain 36 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00850 Trre-Chr1 6472879 6475252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00850 21 372 NAC Transcription Factor Family AT2G24430 49.860 4.51e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g00850 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00850 - - lja:Lj1g3v2035130.1 448.743