Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00849 ATGCCTCGTGGAACACTTGAAGTTGTTCTCATCGGAGCCAAAGGCCTTCGTGACAGTGATTTTTTCAAGAAAATGGACCCCTATGTGATCCTTACGTATCGGACTCAAGAGCACAAAAGCAGTGTAGCCAAAAATGCTGGATCTAATCCTCGTTGGAATGAAAGTTTCCTCTTCACTGTTTGTGACAATGTTGCTGAACTTAATTTGAGGCTAATGGATGAAGATACATTTACCAAGGATGACTTCCTTGGTGAGGCAAAAATTCATTTGGGACCAGTTCTTGAGTATGGGAGCGTACCAGAAACTGCTTATAATGTTGTGAAGCAGCAGAATTACTGTGGAGAGGTTCATGTGGCTCTCACTTTTCATCCTGAGAGTGGGCGTTACTGA 390 0.4308 MPRGTLEVVLIGAKGLRDSDFFKKMDPYVILTYRTQEHKSSVAKNAGSNPRWNESFLFTVCDNVAELNLRLMDEDTFTKDDFLGEAKIHLGPVLEYGSVPETAYNVVKQQNYCGEVHVALTFHPESGRY 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00849 129 Pfam C2 domain 4 104 IPR000008 -
Trre1g00849 129 Gene3D C2 domain 2 125 IPR035892 -
Trre1g00849 129 SMART C2_3c 5 102 IPR000008 -
Trre1g00849 129 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Trre1g00849 129 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
Trre1g00849 129 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00849 Trre-Chr1 6466584 6469154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00849 4 94 C2H2 Transcription Factor Family AT4G21160 36.264 8.86e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00849 - - gmx:100814819 202.601