Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00847 ATGGAATCAAAGTGGAGCAACATTCTAACACCGTCGACGTCAATTTTCTCCACCAGCTTCGAAGATCTCAAATGGATCGCAACAGAATTTGATCATGAACTTTTCACAAAGCGAGTCCAAACACCAAACGAATCAGCCAACGACAACGACGTCAAACCGTGTAAAGTGGATCCTTTCATCGGCGTCGGTGATGTTTTCTCCGGTAACATCGCCGGTGCCGCCGATTTTCGAAATCTGGATGCAGTAACTTCATTTTCAACATGTGGTGAACCAACAAATAATACTCTTGTACGCTCCCAAAACCTCACCCCCAAGCATTCCACCATCACTGCAACTATTGAATCTCAGTCATCCATTTCTGCTACCGTTACAAGCCCAGTGTCAGCTAATAAACCAAGCAGTAGAGAAAATCAAGCCAAAGGAGTGACTACTACAAGTGGTTCCTCACGTGATCCATCTGATGAAGATGATGAAGCAGGTCCTTGTGAACAAAGTACAAACCCTATAGATATGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAGTCTGCCAGAAGGTCAAGAAGAAGAAAACAAGCACATTTGGCAGACCTCGAGCTTCAGGTTGAACAGTTGAGACTTGAAAATGCAAGCTTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGATGCTAACACTAATAATAGAGTGCTAAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTCTCTAGGGGCACTTTACCCACTTTTAACAACCATCTTCTCCAAAATCAGAGCCAATTGAACACCACCCTACCACAAATCAACACTAGTAATCTCCGTTGCATGACGCATGTTTCGCCTACCATCACCGTCCACGGAAACGATGCTTCATATGGTGTTAGTGGACAGAATTCAGCAATTGGACTTGGAGACTTTGATATATCTTGCAGTGATTTCAACAATGGAGTCAATAGTGATGCTGTGAGCTCTTTGACTAGCATATGGCCATAA 1020 0.4343 MESKWSNILTPSTSIFSTSFEDLKWIATEFDHELFTKRVQTPNESANDNDVKPCKVDPFIGVGDVFSGNIAGAADFRNLDAVTSFSTCGEPTNNTLVRSQNLTPKHSTITATIESQSSISATVTSPVSANKPSSRENQAKGVTTTSGSSRDPSDEDDEAGPCEQSTNPIDMKRLRRKVSNRESARRSRRRKQAHLADLELQVEQLRLENASLFKQLTDASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNHLLQNQSQLNTTLPQINTSNLRCMTHVSPTITVHGNDASYGVSGQNSAIGLGDFDISCSDFNNGVNSDAVSSLTSIWP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00847 339 PANTHER BASIC LEUCINE ZIPPER 63 92 302 - -
Trre1g00847 339 CDD bZIP_plant_GBF1 173 224 IPR045314 GO:0003700|GO:0006355
Trre1g00847 339 FunFam BZIP transcription factor 170 221 - -
Trre1g00847 339 Pfam bZIP transcription factor 171 222 IPR004827 GO:0003700|GO:0006355
Trre1g00847 339 SMART brlzneu 168 232 IPR004827 GO:0003700|GO:0006355
Trre1g00847 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
Trre1g00847 339 MobiDBLite consensus disorder prediction 113 149 - -
Trre1g00847 339 MobiDBLite consensus disorder prediction 113 192 - -
Trre1g00847 339 SUPERFAMILY Leucine zipper domain 172 222 IPR046347 GO:0003700|GO:0006355
Trre1g00847 339 Coils Coil 181 250 - -
Trre1g00847 339 Gene3D - 171 228 - -
Trre1g00847 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 233 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00847 Trre-Chr1 6428157 6432960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00847 114 339 bZIP Transcription Factor Family AT5G24800 50.000 3.51e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g00847 bZIP_1 3.4e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00847 K25784 - gmx:100776831 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05381 5 54534512 54539340 Trre1g00847 1 6428157 6432960 PCT