Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00837 ATGGCTCATAAAAGAGCATACTATTGCATATTCATACACTTCATTTTGTTGTCCATTTATTTTGTGCCAACTTTTGGTGACACAAATGGTCAAATTTTGATAAGGTTCAAAAGTTTTTTGTCCAATGATAATGCTAATTTAGACAATTGGGTTGATGAGTCTAATTTGTGCAATTGGGCAGGTTTATTATGCAAAAAAAACAACACATTATTTTATGGCTTGAGATTAGAAAATATGGGACTAAGTGGAAAAATTGATGTAGACACATTATTGGAATTACCAACTTTGGTTACTTTTAGTGTTAATAACAACTTATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAATTAAGGGGATTATATTTGTCTAATAATAAATTTTCAGGTGAAATTTTAGATGATAGTTTTGAAGGTATGGGAAATCTTAAAAGTGTATTTTTGGCTGGAAATAATTTCAATGGTCATATTCCTATTTCACTTGCTCAATTGCCTAATCTTTTGGATTTGGATTTGCATGGGAATAGTTTTGGAGGTAACATACCTGAATTTCAAAACAATGGTTTTAGAGCATTTGATTTATCTAATAACCAATTGGAGGGTCCAATACCACAAAGCTTAAGCAATGAGCCTTCAGCCTCATTTTCTGCCAACAAAGGCCTATGTGGGAAACCTTTGAGCAATCCATGCAACACGTCTCCAACCAAATCTATTGTGAATACTAATTCATCTCCTTCAACTCAAGAAAAGGGAAAAAAGCACAAAAAATTGCTTATAGTGTTGATTGTAGTGTTGGCTATGGTTATTTTAGCTTCAATGTTTGCACTTTTGTTTATCCAAAGCCGCATGCGACGTCGACGAAGTTTAGAACAAAACCAACCCATAATAGGCCTACAATTGAATTCTCAAAAGACTACCCCAAGTGTCATAGAGACAAAATCCATTGATTTGGCTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAATTTTGTTAGGGAAGATAAAGGTGGTTTTGATTTGCAAGACTTGCTTAGGTCCTCAGCTGAAGTGCTTGGAAGTGGAAGTTTTGGATCAACTTATAAGGCTATTGTTTTGAATGGACCAATTGTGGTTGTGAAGAGATTTAGGCAAATGAACAATGTTGGGAAACAAGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTGAATCATCCTAATCTACTCCCTCTTATTGCATTCTACTACAAGAAAGAAGAGAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACATGGTAGAAATGGAATTGTACTGAATTGGTCAACTCGTCTAAAAATCATAAAAGGAGTAGCAAGAGGCTTAGCACATCTCTACAAAGAGTTCCCAAACCAAAACCTACCACATGGTCATCTAAAATCATCCAATGTAATGTTAAACAATTCATTTGAGCCACTTTTAACAGAGTATGGACTTGTACCTATTACAAACAAAAACCATGCACAACAATTCATGACATCCTATAAATCACCAGAAGTCACACACTTTGATAGACCAAATGAAAAAACAGACATTTGGTGTCTTGGAATACTTATTTTAGAATTATTAACAGGAAAATTTCCAGCAAATTATTTGAGACATGGAAAAGGAGAAAATTCCGATTTAGCAACATGGGTTAATTCAGTTGTTAGAGAAGAATGGACAGGTGAAGTGTTTGATAAAGATATAATGGGAACAAGAAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTATTGTTGTGAATGGAGTGTTGAGAGAAGATTGGATTTGAGAGATGCTTTGGCTAAAATTGAAGAACTTAAAGAGAAAGATAATGAAGATGAATCTTTTTCTTATGTTAGTGATGGTGAATTTTATTCAAGAGGTGTCACAGATGATGAATTTTCTTTTTCTATCACTGATCATTCACAAGTTGATAAGTTTGGAAATGTGCCATTGTAA 1995 0.3404 MAHKRAYYCIFIHFILLSIYFVPTFGDTNGQILIRFKSFLSNDNANLDNWVDESNLCNWAGLLCKKNNTLFYGLRLENMGLSGKIDVDTLLELPTLVTFSVNNNLFEGPMPEFKKLVKLRGLYLSNNKFSGEILDDSFEGMGNLKSVFLAGNNFNGHIPISLAQLPNLLDLDLHGNSFGGNIPEFQNNGFRAFDLSNNQLEGPIPQSLSNEPSASFSANKGLCGKPLSNPCNTSPTKSIVNTNSSPSTQEKGKKHKKLLIVLIVVLAMVILASMFALLFIQSRMRRRRSLEQNQPIIGLQLNSQKTTPSVIETKSIDLAGDFSKGENGELNFVREDKGGFDLQDLLRSSAEVLGSGSFGSTYKAIVLNGPIVVVKRFRQMNNVGKQEFFEHMKKLGSLNHPNLLPLIAFYYKKEEKFLVYDFGENGSLASHLHGRNGIVLNWSTRLKIIKGVARGLAHLYKEFPNQNLPHGHLKSSNVMLNNSFEPLLTEYGLVPITNKNHAQQFMTSYKSPEVTHFDRPNEKTDIWCLGILILELLTGKFPANYLRHGKGENSDLATWVNSVVREEWTGEVFDKDIMGTRNGEGEMLKLLRIGMYCCEWSVERRLDLRDALAKIEELKEKDNEDESFSYVSDGEFYSRGVTDDEFSFSITDHSQVDKFGNVPL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00837 664 FunFam Pollen receptor-like kinase 1 424 629 - -
Trre1g00837 664 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Trre1g00837 664 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Trre1g00837 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 624 IPR046959 -
Trre1g00837 664 Pfam Protein kinase domain 350 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00837 664 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Trre1g00837 664 FunFam pollen receptor-like kinase 1 318 422 - -
Trre1g00837 664 ProSiteProfiles Protein kinase domain profile. 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00837 664 SUPERFAMILY Protein kinase-like (PK-like) 350 619 IPR011009 -
Trre1g00837 664 Gene3D Phosphorylase Kinase; domain 1 321 422 - -
Trre1g00837 664 Gene3D Ribonuclease Inhibitor 138 233 IPR032675 -
Trre1g00837 664 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Trre1g00837 664 Pfam Leucine rich repeat N-terminal domain 30 64 IPR013210 -
Trre1g00837 664 SUPERFAMILY L domain-like 31 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00837 Trre-Chr1 6332855 6335867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00837 2 649 Receptor kinase-like Gene Family AT5G35390 44.772 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g00837 Pkinase 9.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00837 - - tpra:123893577 1198.73