Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00833 ATGTGGTTGCAAAAGAATCAATGGGACAAGAAGGATGGGGTGAGTGGAATAGTGGCAGTGGCAATAGATACAGATAAAGGGAGCCAAAATGCACTTAAATGGGCCATTGATCATCTCATCTCAAAAGGCTCAACTATTGTTCTCATCCATGTCAAGGTTAAACCAGCATTCTCATCTAATTCAACCCCAAGGGCAGGGATGATTGAGCAATGCACAATGGTGCCTAAAGAACCTGATGAAATAACCAAAGAAATTTTCCGTCCATATCGCGTCTTTTGTGCGCGAAAAGATATACATTGCAAGGACATTGTACTAGAACATGGAGATGTATCCAAAGCATTAATTGAATATACTTCTCAATCAGCAATTGAGCATTTGGTTATAGGCTCTTCCAACAAAAATGGTTTTCTCAAATTCAAGGTGATAGATATTCCAGGGACTGTATCTAAAGGGGCACCAGATTTTTGTACAGTATATATTGTTGGTAAAGGAAAAATTCAATCCATGAGATCTGCTTCTAGACCTGCTCCTGCATTTTCACCTCTACAAACTCAACTTAGTCAAACTAGTAGTAGGTCAGATCATTCAGAACCTCGTATGCCGATGGCACCGATGGCAGTTAAAGCACCTGAGAGGAGATCATTTGAGGGACCGCCCCGTAGATCCCAAGATGGAGCAGATTCATTCAGGTCACCGTTCACTCGGAGACGTCCAAATGACAAGTCATATGGAGAACTTCCTATGCCAGATAGTGACATATCCTTTGTAAGCTCAGGAAGACCGAGTACAGATCGATTATTCCCTTCAGTGTTTAACCACAACTACAATTCAGAGTCAAGTTTTTCCAATCCTAGGCTATCATATAGTTCTGATACTGATGGAAACTATAGCTTTGAATCAATAAATTATGGAAGGAGGTCTATTGATATTGCCAATCCTGATTTCTCATCTTTCTCACATGATAGTGATGGACTTTCGTCTTCTGCTTCAAATGTGGATGACGTGGAGGCTGAAATGAGGAGACTAAAATTGGAGTTAAAGCAAACAATGGAAATGTATAGCACAGCTTGTAAAGAAGCACTCACAGCACAGCAGAAGGCTGTAGAACTCCAAAGATGGAAATTAGAGGAAGAAAGGAGATTGGAAGAGGCAAGAATGGCTGAAGAAAATGCATTGGCTGTTGTAGAAAAGGAAAAAGCAAAATCAAAAGCAGCCATTGAGACTGCTGAAGCACAAAAGAGGATTGCGGAACTTGAAGCACAAAAGAGAATTAGTGCAGAAATGAAAGCTTTAAGAGAAGCAGAAGAGAAAAGAAAAGTAGTTGATACTTTGTCAAACAAAGATGTGAGGTATAGAAGATATGCAATTGAAGATATTGAAGCTGCAACGAATTTTTTCGCCGACTCTCTTAAGATTGGAGAAGGTGGTTATGGTCCAGTTTATAAATGTCTTCTAGACCATACACCTGTCGCGGTTAAAGTTCTTCGTCCTGATGCACAACAAGGAAGGTCGCAATTTCAACGAGAGGTTGAGGTATTGAGTTGCATAAGGCATCCAAATATGGTTCTTCTCCTAGGAGCCTGTCCGGAATACGGCTGCCTAGTTTACGAGCACATGGCGAATGGAAGTTTGGACGATTGTCTCTTTTGTAGAGGAAACTCTCCACCACTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATTGGAACAGGCTTACTCTTCCTCCACCAAACAAAACCTGAGCCACTAGTACATAGAGACCTTAAACCGGCAAACATCTTGCTCGACCGCAACTATGTTGCAAAGATAAGTGATGTTGGTTTGGCAAGACTAGTACCTCCGTCAGTAGCAGACAACGTGACGCAATATCGAATGACGTCAGCTGCTGGAACATTCTGTTACATAGATCCTGAGTACCAACAGACAGGAATGTTGGGAGTGAAATCTGATATATACTCACTTGGGATAATTTTCTTGCAAATTTTGACGGCACGACCACCGATGGGATTGACACATCATGTTGGTAGAGCAATTGAGAGGGGAACATTTGATGAGATGTTGGATCCAAGAGTGACAGATTGGCCAGCTGAAGAGGCTCTTGGATTTGCTAAGATGGCTATAAAATGTGCCGAGTTAAGGAGGAAAGATAGACCTGATCTTGGTAAAGAGGTTATGCCTGAACTTAATAGGTTAAGAGAACTAGCTGAAAATAATGATCACCATTCTATGTTTAGTGGATTTATGAGTCCATCTACTCAGAGCCAAGTCTCTCTTCAAATGGATGGATCAAGTTCTCCACTTCCTTATTCTGGGGATAGCACAAGAAATACATCAAGCCCTCTTTGA 2349 0.4138 MWLQKNQWDKKDGVSGIVAVAIDTDKGSQNALKWAIDHLISKGSTIVLIHVKVKPAFSSNSTPRAGMIEQCTMVPKEPDEITKEIFRPYRVFCARKDIHCKDIVLEHGDVSKALIEYTSQSAIEHLVIGSSNKNGFLKFKVIDIPGTVSKGAPDFCTVYIVGKGKIQSMRSASRPAPAFSPLQTQLSQTSSRSDHSEPRMPMAPMAVKAPERRSFEGPPRRSQDGADSFRSPFTRRRPNDKSYGELPMPDSDISFVSSGRPSTDRLFPSVFNHNYNSESSFSNPRLSYSSDTDGNYSFESINYGRRSIDIANPDFSSFSHDSDGLSSSASNVDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARMAEENALAVVEKEKAKSKAAIETAEAQKRIAELEAQKRISAEMKALREAEEKRKVVDTLSNKDVRYRRYAIEDIEAATNFFADSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFCRGNSPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIERGTFDEMLDPRVTDWPAEEALGFAKMAIKCAELRRKDRPDLGKEVMPELNRLRELAENNDHHSMFSGFMSPSTQSQVSLQMDGSSSPLPYSGDSTRNTSSPL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00833 782 Pfam Universal stress protein family 18 141 IPR006016 -
Trre1g00833 782 Gene3D Phosphorylase Kinase; domain 1 443 538 - -
Trre1g00833 782 Gene3D HUPs 17 161 IPR014729 -
Trre1g00833 782 SMART serkin_6 466 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00833 782 FunFam U-box domain-containing protein 51 539 739 - -
Trre1g00833 782 MobiDBLite consensus disorder prediction 173 196 - -
Trre1g00833 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 438 538 - -
Trre1g00833 782 Pfam Protein kinase domain 469 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00833 782 MobiDBLite consensus disorder prediction 172 259 - -
Trre1g00833 782 SUPERFAMILY Protein kinase-like (PK-like) 450 721 IPR011009 -
Trre1g00833 782 MobiDBLite consensus disorder prediction 743 782 - -
Trre1g00833 782 PANTHER OS02G0152300 PROTEIN 17 761 - -
Trre1g00833 782 ProSiteProfiles Protein kinase domain profile. 466 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00833 782 CDD STKc_IRAK 472 732 - -
Trre1g00833 782 Coils Coil 325 352 - -
Trre1g00833 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 139 - -
Trre1g00833 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Trre1g00833 782 Coils Coil 358 437 - -
Trre1g00833 782 CDD STK_N 17 164 - -
Trre1g00833 782 Gene3D Transferase(Phosphotransferase) domain 1 539 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00833 Trre-Chr1 6321374 6325732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00833 1 759 Receptor kinase-like Gene Family AT1G78940 56.978 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre1g00833 Pkinase 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00833 - - gmx:100779981 1130.93