Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00825 ATGGCTGTGGAACTCATGGGGTTCCCAAAACTAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGTCTCAAAGGCATGGAACACCTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACACAACTAACTGATCACACCGTTTCTAAGTTCAAAAAACTTATCTCTTTACTTAACCGAACCGGTCATGCCCGGTTCAGACGCGCCCCGGTTCAAACCTCTTCATCATCATCACCGGTTCAAACCTTTTCATCACCACCGGTTCAAATTCAACCAACACCGGTTCAAACCATTTCTCAACCGAAACAGTTTCTTTCTCCAGCACCGGCACTATCTGTGACGCCGATTTCAACACGTCACGCGCCGGCTACCTTTGTTCAACCGCAATCACTTTCACATAGTCTAACGCTCGATTTCACGAAACCGAACGACGTCGTTTTGAGCTCAAATGCGAAAAATAACTCTATGGTTGAACTTGAATTCTCGAAGGATACAGCTACGTTCAGCGTTTCGAATTCAACTTCGTCGTTTATGTCATCTGCTATCACCGGCGACGGTAGCGTCAACGGTAAACAAGGATCGTCGATTTTTCTTACTCCGGCGGCAACACCAGCTATTTCCGGTGGAAAACCACCGCTCTTGTCTGGACCGTCTAAGAAACGGTGTCACGATCACGGTGATCACTCCGACGACGTTTCAGGCTCAAATAAGTGTCACTGTGTTAAGAGAAGAAAAAATAGGGTGAAGAGAACTGTGAGAGTACCAGCGATAAGTTCAAAGACAGCAGATATACCGGCAGACGAGTACTCATGGAGAAAATACGGTCAAAAACCGATCAAAGGATCACCATATCCACGAGGCTATTACAAGTGTAGCACAGTGAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCACCAGATGATCCAACGATGCTGATTGTAACATATGAAGGGGAACACAGACACGCAATTCAAGCCGCGATGCAGGAGAACGCAGCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA 1044 0.4674 MAVELMGFPKLDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVQTSSSSSPVQTFSSPPVQIQPTPVQTISQPKQFLSPAPALSVTPISTRHAPATFVQPQSLSHSLTLDFTKPNDVVLSSNAKNNSMVELEFSKDTATFSVSNSTSSFMSSAITGDGSVNGKQGSSIFLTPAATPAISGGKPPLLSGPSKKRCHDHGDHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPTMLIVTYEGEHRHAIQAAMQENAAGIVGLVFEST 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00825 347 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00825 347 FunFam WRKY transcription factor 65 252 329 - -
Trre1g00825 347 Pfam Plant zinc cluster domain 222 266 IPR018872 -
Trre1g00825 347 MobiDBLite consensus disorder prediction 210 240 - -
Trre1g00825 347 SUPERFAMILY WRKY DNA-binding domain 264 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g00825 347 Gene3D WRKY domain 251 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g00825 347 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 332 IPR044810 GO:0003700
Trre1g00825 347 MobiDBLite consensus disorder prediction 220 240 - -
Trre1g00825 347 MobiDBLite consensus disorder prediction 71 95 - -
Trre1g00825 347 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g00825 347 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00825 Trre-Chr1 6258558 6261200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00825 1 346 WRKY Transcription Factor Family AT2G24570 56.583 8.23e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g00825 WRKY 8.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00825 - - tpra:123902288 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00825 1 6258558 6261200 Trre1g00825 1 6258558 6261200 ECH