Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00824 ATGGCTGGTTCTAGTTCTTGTTCTGTTTCTGGTTCTGGTTCTGTTAGTTGTAAAAGTGATAGTGGAATTGAGAATTTGATTTGTGCTAGTAAATCATTGAAACTTAGCTTAGAGAAATCAAAGAGTGTTGGGTTAGCATTAGAGAAAGCAGGGCCAAGATTAGATGAAATTAGGGTAAGGTTACCTTGGCTTGAATCCGCGGTTAGGCCGATTCGAGCTGAGAAGGATGCTCTTGTGGCCGTAGGAGGTCATATTAATAGGGCTGTTGGTCCTGCGGCTGCTGTGTTGAAGGTTTTCGATGCAGTTCATGGGCTTGAGAAGTCTTTGTTGTCCGATCCACGGATTGATTTACCAGGTTATTTGTCGGTTTTGAAGCGCCTTGAGGAGGCGTTGAGGTTCTTGGGAGATAATTGTGGGTTGGCTATTCAGTGGTTGGATGATATAGTTGAGTATTTAGAAGATAATTCGGTTGCTGATCAGGTTTATCTTAAGAATTTGAAGAAGGAGTTGGAGAATCTTAAGGGATCGCAGAATGGTGATTTAGATGGTGGTTTGTTAGATGCTGCTTTAGATAAATTAGAGAATGAGTTCAGGTTGCTTTTAACTGATAACAGTGTGCCGCTTCCTATGTCGTCGGATTCTCTTGGTGATCAGCCTTGCATCGCGCCTTCGCCTCTGCCTGTTTCTGTCGTTCATAAATTGCAGGCTATTCTTGGTAGGTTGAGAGCTAATGATAGACTTGATAAATGTGTGTCGATTTATGTTGAAGTTAGAAGTTCTAATGTGAGGGCGAGTTTGCAGGCACTGAATTTGGATTACCTTGAGATCTCGGTGTCTGAGTTCAATGATGTGCAGAGTATAGAGGTGTATATAGCTCAGTGGGGAAAGCATTTAGAGTTTGCGGTGAAGCATTTGTTTGAGGCTGAGTATAAGCTCTGTAATGATGTGTTTGAGAGGCTTGGACTCGATGTGTGGATGGGTTGCTTTTCGAAGATAGCTGCACAGGCTGGTATACTTGCATTTCTTCAGTTTGGTAAGACTGTTACGGAGAGTAAGAAAGATCCCATCAAGCTCTTGAAGTTGTTGGATATTTTTGCGTCGTTGAACAAATTAAGACTGGATTTCAATCGTCTTTTCGGGGGTGATGCGTGTGTCGAAATCCAAAATTTAACTAGGGAACTTATTAAGAGTGTGATTGATGGTGCAGCAGAAATTTTCTGGGAACTTTTGGTTCAGGTAGAGTTACAGAGGCAGAACCCTCCTCCTCCAGATGGAAGTGTTCCGAGATTGGTGAGCTTTATCACTGATTACTGCAATAAACTCTTGGGGGACGACTATAAGCCTATACTGACTCAAGTCCTGATCATTCACCGAAGCTGGAAGCGTCAAAGTTTTCAGGAGAAGCTTCTTGTTAATGAGATTTGGAACATATTGAAAGCCGTTGAATTAAATTTGGAGACATGGATCAAGGCTTATGATGATCCTATGTTGTCGAGCTTTTTCGCCATGAACAATCACTGGCATCTGTTCAAGCATTTGAAAGGGACAAAGCTTGGAGATCTTTTAGAGGATTCTTCGTTAAAGGAACATGAACAGTATAAGGACTATTACTCTGCAGTATTCTTGCGAGATAGTTGGGGAAAGCTTCCAGGACATTTGAGTAGGGAAGGGCTGATTCTTTTCTCAGGAGGGCGTGCCACTGCTCGTGATTTGGTCAAGAAAAGATTGAAAAAGTTCAACGAAGTTTTTGATGATATGTATTCAAAGCAGTCAGGTTGGATCATGGTTGAACGAGATCTGAGAGAGAAGACTTGTCAGCTTATAGTGCAGGCTGTGGTGCCTGTTTACCGGAGTTACATGCAGAATTACGGTCCATTGGTCGAGCAAGATGCCAGCTCTAATAAATATGCAAAATACACAGTACAGAAGCTCGAAGAAATGCTTTTGTGTCTTTACCGGCCAAAGCCTGCAAGACACGGCAGCTTAAGAAGTCCGCAGCTTAGTGGAAAGTACGGGAATGGAATACCTGATCTTCGTCGAACGGCTTCTGCAGTCGTGTAG 2061 0.427 MAGSSSCSVSGSGSVSCKSDSGIENLICASKSLKLSLEKSKSVGLALEKAGPRLDEIRVRLPWLESAVRPIRAEKDALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRIDLPGYLSVLKRLEEALRFLGDNCGLAIQWLDDIVEYLEDNSVADQVYLKNLKKELENLKGSQNGDLDGGLLDAALDKLENEFRLLLTDNSVPLPMSSDSLGDQPCIAPSPLPVSVVHKLQAILGRLRANDRLDKCVSIYVEVRSSNVRASLQALNLDYLEISVSEFNDVQSIEVYIAQWGKHLEFAVKHLFEAEYKLCNDVFERLGLDVWMGCFSKIAAQAGILAFLQFGKTVTESKKDPIKLLKLLDIFASLNKLRLDFNRLFGGDACVEIQNLTRELIKSVIDGAAEIFWELLVQVELQRQNPPPPDGSVPRLVSFITDYCNKLLGDDYKPILTQVLIIHRSWKRQSFQEKLLVNEIWNILKAVELNLETWIKAYDDPMLSSFFAMNNHWHLFKHLKGTKLGDLLEDSSLKEHEQYKDYYSAVFLRDSWGKLPGHLSREGLILFSGGRATARDLVKKRLKKFNEVFDDMYSKQSGWIMVERDLREKTCQLIVQAVVPVYRSYMQNYGPLVEQDASSNKYAKYTVQKLEEMLLCLYRPKPARHGSLRSPQLSGKYGNGIPDLRRTASAVV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00824 686 SUPERFAMILY Cullin repeat-like 95 652 IPR016159 -
Trre1g00824 686 PANTHER EXOCYST COMPLEX PROTEIN EXO70 91 648 IPR004140 GO:0000145|GO:0006887
Trre1g00824 686 FunFam Exocyst subunit Exo70 family protein 145 658 - -
Trre1g00824 686 Gene3D Exocyst complex component Exo70 141 659 - -
Trre1g00824 686 Pfam Exo70 exocyst complex subunit 293 648 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00824 Trre-Chr1 6243765 6245825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00824 16 686 EXO70 exocyst subunit family AT4G31540 73.830 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00824 K07195 - gmx:100796139 1156.74