Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00818 ATGATGGATGGAAATCCTAGTAAAAAAAGCACTGATGGGATGGTAGCCCCTAGAAAAAGGATCAGCGTTGTGTTTAGAGATACCGCTAATACCAGAAATCGAAATGATCAAATTTGCAGCCGAGTGGGTTGCAGTAGTACAGCCAACCCTCCTAAGGTTGCTCAAGTCAGATCTTCCGAAAAAGGTAAATCTTCAAGGCCATCAATGCAGTCAACTTCAAGTGGCAAGGAGGTAATCGGTAGTTCCCGTAGAACAGCAACTAACCCAGCAAAACCACTTATAAAGCCTCGGAAAACATTAACTTCAAGCGGGCTTCAAGCTGACAAGGAAGGTAAAAAGTCTACTAATGTAATTTTGACGGAAGTGGGAAAATCTAGTGGAGTATCAAAATTACAATCTCAAAGGAATTTTAATCAAAGACCTGGATTTCGTCAACAAGAAAATGAAAGCATTCGTCCGGCGAAACAAGCTGTTTCTAGCAGCAAGTATGGACTGAGGAACCTCAGATGCAATACTATATCTGATATCATCCCTTCTTGCTCATCATCAGATTCTACCCTTAATAGAAAGAAGACTGTGATTAAAAAGGGAAACTCTGGAGGGGAAAGTAGCTCAACTGTGAAAGGGAAGAAGATGAACGGGTCTTCATTGGAAGGGTCGAATTCTGGCTCCAGAAATGGAATATCTATATCTGAAGGAAGAGGATCTAGAAGTATTCCTCCTCCTCGTAGGGACAATACCAAAGCAACAGTTAGACCTGAAAGATCGGTTAGTCGTTATGCCAGGGGAAGATTTTCTAGCCAAGGAAATGAAAACGCCACGGAAACAAATGAGCCCTCTGTTGAGTTACCTAGTTCGCCTCATTGTCTTGATCTTAATTCTCCTGTCATTGAAGAGTTACGTGATATTATGCCTATGTCTCCTGAAGAATATGACATCCCTCATTCTCTAACAAATCAGAATGGATTTCGGCGTTACGATATGGAGAATATTTCCGAGGTATTATTGGCACTTGAGAGAATTGAGCAAAATGAAGAGTTAACCCATGAGCAAATTCGTTTACTAGAGACCAACTCATTTCTTAACGGGCTTGACTTATATGATCGTCATAGAGACATGCGATTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTTGAAGAGAGGATGGGTACCGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGATAGTCTTAAAAGAAGTATCTATCAGTCTGCGCCTTTAGATGATGCATCCAACTGTGTTAATGAGGATAAGGCTTATATCAAATGTTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGAGACTGCAATGTTCACATAAATATCATGTTGATTGTATACAGGACTGGTTGAGGTTGAAGAACTGGTGCCCTATTTGCAAAGGGTCAGCGGCACTGTCCAATTCATCGTCATCTCATTAA 1464 0.4133 MMDGNPSKKSTDGMVAPRKRISVVFRDTANTRNRNDQICSRVGCSSTANPPKVAQVRSSEKGKSSRPSMQSTSSGKEVIGSSRRTATNPAKPLIKPRKTLTSSGLQADKEGKKSTNVILTEVGKSSGVSKLQSQRNFNQRPGFRQQENESIRPAKQAVSSSKYGLRNLRCNTISDIIPSCSSSDSTLNRKKTVIKKGNSGGESSSTVKGKKMNGSSLEGSNSGSRNGISISEGRGSRSIPPPRRDNTKATVRPERSVSRYARGRFSSQGNENATETNEPSVELPSSPHCLDLNSPVIEELRDIMPMSPEEYDIPHSLTNQNGFRRYDMENISEVLLALERIEQNEELTHEQIRLLETNSFLNGLDLYDRHRDMRLDIDDMSYEELLALEERMGTVSTALTEEALSDSLKRSIYQSAPLDDASNCVNEDKAYIKCCICQEEYVVGDEVGRLQCSHKYHVDCIQDWLRLKNWCPICKGSAALSNSSSSH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00818 487 Coils Coil 338 358 - -
Trre1g00818 487 MobiDBLite consensus disorder prediction 197 233 - -
Trre1g00818 487 ProSiteProfiles Zinc finger RING-type profile. 434 475 IPR001841 -
Trre1g00818 487 Pfam Ring finger domain 433 475 IPR001841 -
Trre1g00818 487 MobiDBLite consensus disorder prediction 193 288 - -
Trre1g00818 487 MobiDBLite consensus disorder prediction 126 161 - -
Trre1g00818 487 SUPERFAMILY RING/U-box 433 477 - -
Trre1g00818 487 MobiDBLite consensus disorder prediction 1 112 - -
Trre1g00818 487 MobiDBLite consensus disorder prediction 261 283 - -
Trre1g00818 487 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 68 478 IPR045191 GO:0061630
Trre1g00818 487 SMART ring_2 434 474 IPR001841 -
Trre1g00818 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 479 IPR013083 -
Trre1g00818 487 FunFam E3 ubiquitin-protein ligase arkadia 396 480 - -
Trre1g00818 487 MobiDBLite consensus disorder prediction 26 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00818 Trre-Chr1 6206746 6208873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00818 331 478 C3H Transcription Factor Family AT2G15530 44.595 1.41e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00818 - - tpra:123907431 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00818 1 6206746 6208873 Trre1g00818 1 6206746 6208873 ECH
Trre1g00818 1 6206746 6208873 Trre5g05346 5 54249081 54251415 PCT