Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00813 ATGGCTAGCATCAACAAAGAACAGCTGGAAAACGAGGATGTCGATTTGGAACGGATTCCTTTGGATGAAGTGTTTGAACACCTGAAATGCTCGAGGGAAGGACTCACTTCCGAGGAAGGAGCCAACAGGCTTCAAGTGTATGGTCGAAACAAATTGGAAGAGAAAAAAGAGAGCAAGTTTTTTAAGTTTTTGGGTTTTATGTGGAACCCTCTATCATGGGTTATGGAAGCTGCTGCCATCATGGCGATTGCTCTGGCGAATGGTGGAGGAAAGCCTCCGGATTGGCAAGATTTTGCTGGAATTCTTATTCTATTGGTGATCAACTCGACTATCAGTTTCTTCGAAGAGAACAATGCTGGCAATGCTGCGGCCGCTCTTATGGCTGGATTAGCTCCAAAGACAAAGGTGCTAAGAGACGGAAAATGGAGTGAGCAAGATGCTGCGATTTTAGTACCGGGAGATATTATCAGCATCAAGCTAGGAGACATTATACCAGCCGATGCACGACTACTAGAGGGTGATCCTTTAAGCGTTGACCAATCGGCCTTAACAGGAGAATCACTTCCTGTTACAAAGTGTGCAACTCAAGGAGTGTTCTCAGGATCGACGGTGAAAAAGGGCGAAATAGAAGCCATTGTGTTTGCTACTGGTGTTCACACTTTCTTCGGCAAAGCAGCTCATTTGGTGGATAGTACAAATCAAGTAGGACATTTTCAGAAGGTGCTAACCTCTATCGGGAACTTCTGCATTTGCTCGATCGCCATTGGTATACTGGTTGAGATTGTCGTGATGTATCCGATTCAACACCGCAGATATAGAGATGGAATTGACAATCTTTTGGTTCTATTGATTGGTGGAATTCCAATTGCTATGCCAACTGTTTTGTCCGTTACTATGGCTATCGGTTCTCATAGGCTTTCGCAGCAAGGCGCGATCACAAAAAGAATGACTGCTATTGAGGAAATGGCTGGCATGGATGTTCTGTGCAGTGATAAAACTGGAACTCTCACTCTGAATAAGCTTAGTGTTGATACAAACTTGATTGAGGTGTTTGCTAGAGGTCTTGATAAGGACCAAGTGATACTTCTAGCTGCAAGAGCTTCTAGGACAGAAAATCAGGATGCTATTGATGCTGCAATTGTTGGAATGCTTGCTGATCCACAAGAGGCTAGAGCTAATATCAATGAGGTTCACTTTCTTCCGTTCAATCCGGTAGACAAGAGGACTGCTCTTACCTATGTTGATGGTGATGGAAATTGGCATAGAGCTAGCAAAGGAGCTCCTGAACAGATATTGAATCTCTGCAACTGTAGAGAGAATGTAAGGACAAAGGCTCATACAGTGATTGATAGGTTTGCTGAGCGCGGCTTACGGTCCTTAGGTGTTGCTTATCAGGAAGTCCCCGAGAAATCCAAAGACGGTCAAGGGGCCCCTTGGCAATTTGTTGGACTATTGCCCTTATTCGATCCCCCAAGGCATGACAGTGCTGAAACCATTAGAAGAGCACTAAACCTTGGCGTCAACGTAAAAATGATTACCGGGGATCAACTTGCCATTGGGAAGGAAACCGGCAGAAGGCTTGGAATGGGAACGAACATGTATCCATCATCTGCATTGCTCGGAGAAGGTTCTTCTACTTCAGGTATTCCTATCGATGAGTTGATCGAGAAAGCCGATGGATTTGCAGGAGTATTTCCCGAACACAAATTCGAAATCGTTAAAAAACTTCAAGAGAAGAAGCACATATGTGGAATGACCGGTGATGGTGTAAACGACGCACCAGCGTTGAAGAGAGCTGATATCGGAATTGCTGTTGCCGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTTTGAGTGTAATTATCAGTGCTGTGCTCACCAGTAGGGCCATTTTCCAAAGAATGAAAAACTACACTATTTATGCTGTGTCCATCACCATTCGTATCGTGCTTGGTTTCATGCTAATTGCTTTGATCTGGAAATTTGATTTTTCCCCCTTCATGGTTCTGATAATTGCAATACTGAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCGCTACCCGACAGTTGGAAACTGAAGGAGATATTCGCTACCGGTGTTGTGCTTGGCAGTTACATGGCACTGATGACAGTCATATTTTTCTGGGTGGTGCATGATACCGACTTTTTCTCGGAGAAGTTTGGTGTGAGGTCTATAAGACATAATCCTGGAGAAATGATGGCGGCTTTATATCTACAAGTCAGTATAATAAGCCAAGCACTGATTTTCGTAACTAGGTCTCGCAATTGGTCTTTCTTGGAAAGACCTGGCCTTTTACTACTCGCTGCTTTTGCCGGTGCTCAACTGGTTGCAACACTTATAGCAGTGTATGCTAATTGGGGATTTGCAAGAATAAATGGAATGGGATGGGGTTGGGCCGGCGTAATTTGGTTGTACAGTTTGGTAACTTATATCCCTCTTGATTTTCTCAAAATCGCAATCCGCTATATTTTGAGCGGAAAGGCGTGGGATAATCTTTTGGAAAACAAGACTGCCTTTACTACTAAGAAAGATTACGGTAGAGGAGAGAGGGCAGCGAATTGGGCGGCAACGCAGAGATCACTTCATGGTCTTCAGGAACCAACCCAGAACAACATTTTCAGTGAAACCAGCACCTACCGCGAACTTTCAGAAATTGCCGAACAGGCAATGAAACGTGCAGAAATTGCACGGCTCGTGGAGAAGCATACATTTAAAGGGCGCATTGAGAAGGTCGTCAAGCTTAAAGGTTTAGACCTTGATACTTCTAAGAATCATTATACAGTCTAA 2850 0.44 MASINKEQLENEDVDLERIPLDEVFEHLKCSREGLTSEEGANRLQVYGRNKLEEKKESKFFKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFAGILILLVINSTISFFEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISIKLGDIIPADARLLEGDPLSVDQSALTGESLPVTKCATQGVFSGSTVKKGEIEAIVFATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCICSIAIGILVEIVVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDTNLIEVFARGLDKDQVILLAARASRTENQDAIDAAIVGMLADPQEARANINEVHFLPFNPVDKRTALTYVDGDGNWHRASKGAPEQILNLCNCRENVRTKAHTVIDRFAERGLRSLGVAYQEVPEKSKDGQGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGEGSSTSGIPIDELIEKADGFAGVFPEHKFEIVKKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGSYMALMTVIFFWVVHDTDFFSEKFGVRSIRHNPGEMMAALYLQVSIISQALIFVTRSRNWSFLERPGLLLLAAFAGAQLVATLIAVYANWGFARINGMGWGWAGVIWLYSLVTYIPLDFLKIAIRYILSGKAWDNLLENKTAFTTKKDYGRGERAANWAATQRSLHGLQEPTQNNIFSETSTYRELSEIAEQAMKRAEIARLVEKHTFKGRIEKVVKLKGLDLDTSKNHYTV 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00813 949 PRINTS H+-transporting ATPase (proton pump) signature 558 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 PRINTS H+-transporting ATPase (proton pump) signature 758 779 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 PRINTS H+-transporting ATPase (proton pump) signature 586 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 PRINTS H+-transporting ATPase (proton pump) signature 617 642 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 SFLD p-type atpase 311 637 IPR044492 -
Trre1g00813 949 FunFam Plasma membrane ATPase 481 634 - -
Trre1g00813 949 Gene3D - 132 216 - -
Trre1g00813 949 FunFam ATPase 4 plasma membrane-type 576 813 - -
Trre1g00813 949 FunFam Plasma membrane ATPase 132 216 - -
Trre1g00813 949 SFLD Haloacid Dehalogenase 311 637 - -
Trre1g00813 949 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Trre1g00813 949 SUPERFAMILY HAD-like 325 633 IPR036412 -
Trre1g00813 949 CDD P-type_ATPase_H 34 839 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre1g00813 949 PANTHER CALCIUM-TRANSPORTING ATPASE 17 880 - -
Trre1g00813 949 Pfam E1-E2 ATPase 131 308 - -
Trre1g00813 949 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Trre1g00813 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 845 IPR023298 -
Trre1g00813 949 Gene3D - 898 949 - -
Trre1g00813 949 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Trre1g00813 949 Gene3D - 341 488 IPR023299 GO:0000166
Trre1g00813 949 Pfam haloacid dehalogenase-like hydrolase 325 600 - -
Trre1g00813 949 FunFam Plasma membrane ATPase 341 488 - -
Trre1g00813 949 NCBIfam HAD-IC family P-type ATPase 101 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 NCBIfam HAD-IC family P-type ATPase 561 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre1g00813 949 Gene3D - 94 813 - -
Trre1g00813 949 Gene3D - 326 623 IPR023214 -
Trre1g00813 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Trre1g00813 949 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 804 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 586 605 - -
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 609 621 - -
Trre1g00813 949 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00813 Trre-Chr1 6146338 6152534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00813 2 949 Primary Pumps ATPases AT2G07560 80.190 0.0 1568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00813 K01535 - gmx:100791692 1590.86