Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00809 ATGTCTGGATTAACTTGCAATTCTTGTAACACTGAATTCAAAGATGATTCCGATCAAAAACTTCATTACAAATCCGAATGGCATCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACTGAAGCATTGTTTCTAGCTAGACAAGCTGCTCTTGCTCAAGAGAGAGATAAATCTAATGAAAGTCCTATGCTCTATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGCGGGCGTCTGAAGGAGCTAGTAATTCAGATGGTAAGGCTATAATTAAGCCACTTCCACAACGCGTTGTGAATAAGCCTCCTCCTAGAAGACTGGCAGATATCTCTGCTGATGATGAAGAAAGTGAAGATGAATGGATAGAGGTTGATTCTGATGATGATCTGCTTGATGATGCTGCAAAGTCCTTGACAGATTTGAATGTGGACGAGAATGCTGATAATGATGATATGGACGAAGATGATGATGATGTTGTGGACTTGGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAAACATTAGAAAACTGCATGGTTCACATGCACAAGCACCATGGGTTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTCACCTATCTTGGACTAAAGGTCAAAAGGGACTACCTGTGTCTGTACTGCAACGATAGGTGTCATCCTTTCAGCAGCCTGGAAGCAGTCAGGAAACATATGGTAGCCAAAAATCACTGTAAAGTGCATTATGGTGACGATGATGACGAGGAGGAAGTAGAGTTGGAAGAATTCTATGATTATACTAGCAGTTATTATGTTGATGAGCAAGGGAAGCAGCTAGTTGTATCCGGTGATGCTGATAACAATATAGAACTTAGTGATGGGTCTGAGCTTGTAATCACTAAGCGATCTGGTAACAAAAAATCAACCAGAACTCTAGGTTCCCGTGAATACCTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATAACATCGCCGTTACTGCGGAATTGGCTGCAAGGTACAGGAGCATGGGTTTGGCCACTGTACAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGCGTGGAGCAAATGCGTAGCAAGATGGGAATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACCTATTAG 1236 0.4296 MSGLTCNSCNTEFKDDSDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHMMRASEGASNSDGKAIIKPLPQRVVNKPPPRRLADISADDEESEDEWIEVDSDDDLLDDAAKSLTDLNVDENADNDDMDEDDDDVVDLDPSCCFMCDKEHKTLENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMVAKNHCKVHYGDDDDEEEVELEEFYDYTSSYYVDEQGKQLVVSGDADNNIELSDGSELVITKRSGNKKSTRTLGSREYLRYYRQKPRPSPANNIAVTAELAARYRSMGLATVQSREQLVRMKVLKQMNRSGVEQMRSKMGMKSNVIRNLPNNVTY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00809 411 SUPERFAMILY beta-beta-alpha zinc fingers 169 244 IPR036236 -
Trre1g00809 411 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Trre1g00809 411 PANTHER ZINC FINGER PROTEIN 622 1 409 IPR040025 -
Trre1g00809 411 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Trre1g00809 411 SMART c2h2final6 68 92 IPR013087 -
Trre1g00809 411 SMART c2h2final6 183 205 IPR013087 -
Trre1g00809 411 SMART c2h2final6 4 28 IPR013087 -
Trre1g00809 411 SMART c2h2final6 234 261 IPR013087 -
Trre1g00809 411 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Trre1g00809 411 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Trre1g00809 411 MobiDBLite consensus disorder prediction 89 144 - -
Trre1g00809 411 SUPERFAMILY beta-beta-alpha zinc fingers 58 97 IPR036236 -
Trre1g00809 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Trre1g00809 411 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00809 Trre-Chr1 6116559 6119053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00809 1 411 C2H2 Transcription Factor Family AT4G31420 63.855 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00809 K14816 - gmx:100796317 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00809 1 6116559 6119053 Trre1g00809 1 6116559 6119053 ECH