Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00795 ATGAAGTCATTTAGTGATCTGGGCTTATCTTCTGAATTGGTGGAAGCTTGTCAAAAAAAGCTGGTTTGGTATGATCCGACGAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGACGTGTTTGCAATTTCCCCACCGCGTTCTGGTAAGGCTGGGGCGTTTGTTCTTCCTATATTGCATACCCTCTTAGAAACCGGACCGAACCTAGACAGTTTCTTTGCTTGTGTGCTATCTCCTACAAGGCGCCTTGTTTCTCAAATTGCTGAATACTTTTTTGCTCTAGGATCTCAATTTGGTGTCAAGTATGCTACCCTTGTTGAAACGCTTGACATGGTAACTCTGGAAAACCAGATTTCACAGCAGCCTCATATTATTGTTGGGACCCCTGGACAAATCTTGAATAACCTAAGACACACCCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACTTGGTTATAGATGATGCACACCTGCTGTTGAATAATCCCTCTTCTGAGCAACAACTGTATGATATTTTAGAAATGATTCCTAGTGAGCGGACAACACTTCTTTTTTCACCTACATTCACAGAGAAGGTGCATACATTCGAAAGTGCGTGTTTAAGGAATCCTGTGAAGATTGACGTATCTTCAAAATATTCTATTGTGGACACATTGCGGCATCAATGGTGCTCTATGAATTCAAGACTTAAGAATTGTTACCTTGCATACACTCTTGCTGAAATGACTGGAAGAAAATCAGTGGTATCCACTGCGGCCTGTGGTTCCACGCTTCGTCTGGCTTTGATTCTTAAGAATCTTGGTATCAGAGCCATCCCAATTATTATTTATATGAGTCAGGCAAAGAAACTTGAATCCTTGAATGCGTTCAAGTCTGGGGAGTGCAATATTCTCCTCTGTAGTGACCGCGCTAGTAGGGGACTAGATATTCCAGCGGTAGATACGGTGATAAACTACGAGATTCCTTTTGATTTAAACGATTATATGTACCGCGTCCGGACTGCTCATGCTGATTTTGCCATTTCCTTTGCGTGCTTTTCTGAAAGGAGAGAATTCAATATGATAGAGAGACTTATAGGCAATCAGATAGCAGTGTATTCTGCACCATATGAGGATGTTTTGCTTTTGGAAAGCCGTGTTAGTGAAGCCGAAATATTGGCACTAAAGGAAATTAACGAATTCGGTTGGAAGAGCGGAGAATACATAGAACAGGAGGATGTACTACACTGA 1242 0.4155 MKSFSDLGLSSELVEACQKKLVWYDPTKIQTEVIPLALQGKDVFAISPPRSGKAGAFVLPILHTLLETGPNLDSFFACVLSPTRRLVSQIAEYFFALGSQFGVKYATLVETLDMVTLENQISQQPHIIVGTPGQILNNLRHTQGFSLALGRLKYLVIDDAHLLLNNPSSEQQLYDILEMIPSERTTLLFSPTFTEKVHTFESACLRNPVKIDVSSKYSIVDTLRHQWCSMNSRLKNCYLAYTLAEMTGRKSVVSTAACGSTLRLALILKNLGIRAIPIIIYMSQAKKLESLNAFKSGECNILLCSDRASRGLDIPAVDTVINYEIPFDLNDYMYRVRTAHADFAISFACFSERREFNMIERLIGNQIAVYSAPYEDVLLLESRVSEAEILALKEINEFGWKSGEYIEQEDVLH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00795 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 31 IPR014014 GO:0003724
Trre1g00795 413 Pfam Helicase conserved C-terminal domain 244 336 IPR001650 -
Trre1g00795 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 213 IPR027417 -
Trre1g00795 413 SMART ultradead3 22 227 IPR014001 -
Trre1g00795 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 378 IPR001650 -
Trre1g00795 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 348 IPR027417 -
Trre1g00795 413 PANTHER RNA HELICASE 2 348 - -
Trre1g00795 413 Gene3D - 1 214 IPR027417 -
Trre1g00795 413 Gene3D - 222 383 IPR027417 -
Trre1g00795 413 Pfam DEAD/DEAH box helicase 27 198 IPR011545 GO:0003676|GO:0005524
Trre1g00795 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 211 IPR014001 -
Trre1g00795 413 SMART helicmild6 262 337 IPR001650 -
Trre1g00795 413 CDD SF2_C_DEAD 223 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00795 Trre-Chr1 5995517 5999272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00795 42 360 Eukaryotic Initiation Factors Gene Family AT5G11170 26.284 1.44e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00795 K14777 - gmx:100775796 417.542