Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00761 ATGCATCCATTAATAATGCTTGCTGCATTATTCCTGTTGGTAGAAGCAGTTGCATCTGATCAACCCCAACAAGTCCTACCAGGCTGCAATAACACTTGTGGAGATGTACTAGTTCCATATCCATTTGGCATGGGACATTCAACAACACAAGATCATACACCATGTTACATGGATTCTAAATTTGAGCTCACTTGTAGAAACTCAAAATTAATCTATAATAAAAATATCCCAGTCCTAGAAATAAATCCCCAAAGTCAAATGGTAATGAAATTTTTTGTCTCACATCTTTGTCCTCATAGTAATAATACTAAAGATGCGAATAAACCTCTTCTCACAGTTTCTTCTTTCACAATTTCAAGCACAGAAAACAAATTCATAACCGTTAGTTGCGACGGTTATGGAATTCTCAACAGTAATTTCAAGGGTGCAACTTATTCAACAGGGTGCTTAACAAGATGTGATAATAATTATGACCCTAAAATGGTAATTGGGAATAACACTGGAAAATGCACAGGTATAGGGTGTTGCCAAGTGGATATTCCTCCACTTATGAAAAATTTCACTATACAAACGTTTAAATTCCCAACTTCTGAATCTCAGAAAGATTGTAGCTATTCCTTTATTGCAAAACAAGGATACTATAATTTTTCTGTAGAGCATATAAATAATCTATCTAATCAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTCAAATAGCGCGAACTACAGATAGCTATGCCTGCAAGGAAAATAGTGAATGCTTCGATAATGATCCAGATTATGAGGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCAAAAAATTTACATCGATGCAAAAATAGCGCAAATTGCATCAACACTGCTGGGAATCACACTTGTTTCTGTCCTGTGGGGCAAACCGGAGTAGGAGCAGCAATTATTGTTCTATTTGTGGTGATAATTTTCTCCTTACACCAAAAGAGGAAACTTACCAAATTGAAAGGGAAATTCTTTAGGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTCTCCAAAGAAAAGACTCGTCTAAAATAGCTAATATTTTCAAAGAAAGTGAGCTAAGGACCGCCACTAACAACTATGACAAGAGCTTAATCATAGGTAGAGGAAGTTTTGGTACAGTTTACAAAGGGGAACTAGAAGATGATAGAATTGTTGCTATCAAAATGTCCAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGCTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACACACAAGGTAATGAGGTGAATAATGAATCATGGAAAATTCGTCTTAAGATAGCAACAGATGTAGCTGGAGCTTTGTCATATCTACATTCGGCTGCTTCAATACCCATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGAAATAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCTAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTGTTGTCGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTAGTAGGCCAGAAGAGAGAAGAAATCTTGCTGCGCATTTTCTGTCTTGCGATAATGTGTTTGAAATTATCCAAGATGGTATGTTGAATGAAGAAAACAAAAAAGAGATCAAGGAGGTAGCTGTGCTTGCAGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAAGAAGTGGCTATGGAATTGGAAACAATGATCTTAAATGTAGAGGGGAATTAG 2007 0.3722 MHPLIMLAALFLLVEAVASDQPQQVLPGCNNTCGDVLVPYPFGMGHSTTQDHTPCYMDSKFELTCRNSKLIYNKNIPVLEINPQSQMVMKFFVSHLCPHSNNTKDANKPLLTVSSFTISSTENKFITVSCDGYGILNSNFKGATYSTGCLTRCDNNYDPKMVIGNNTGKCTGIGCCQVDIPPLMKNFTIQTFKFPTSESQKDCSYSFIAKQGYYNFSVEHINNLSNQTFPMVVNWAVTNESCQIARTTDSYACKENSECFDNDPDYEGYRCKCLEGFEGNPYLPGGCTDIDECAKNLHRCKNSANCINTAGNHTCFCPVGQTGVGAAIIVLFVVIIFSLHQKRKLTKLKGKFFRQNGGSILEQKLLQRKDSSKIANIFKESELRTATNNYDKSLIIGRGSFGTVYKGELEDDRIVAIKMSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTQGNEVNNESWKIRLKIATDVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASKLVPLDQSEIATMVQGTIGYLDPEYMLTSQLTEKSDVYSFGVVVVELLTGERPFSFSRPEERRNLAAHFLSCDNVFEIIQDGMLNEENKKEIKEVAVLAAKCLRLRGEERPSMKEVAMELETMILNVEGN 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00761 668 CDD STKc_IRAK 396 659 - -
Trre1g00761 668 SMART egfca_6 289 328 IPR001881 GO:0005509
Trre1g00761 668 Pfam Protein kinase domain 392 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00761 668 FunFam Wall-associated receptor kinase 2 466 667 - -
Trre1g00761 668 SMART serkin_6 390 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00761 668 Gene3D Laminin 291 328 - -
Trre1g00761 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Trre1g00761 668 Pfam Wall-associated receptor kinase galacturonan-binding 29 87 IPR025287 GO:0030247
Trre1g00761 668 ProSiteProfiles EGF-like domain profile. 289 327 IPR000742 -
Trre1g00761 668 Gene3D Laminin 240 290 - -
Trre1g00761 668 SMART egf_5 241 288 IPR000742 -
Trre1g00761 668 SMART egf_5 292 333 IPR000742 -
Trre1g00761 668 Gene3D Transferase(Phosphotransferase) domain 1 466 666 - -
Trre1g00761 668 FunFam Wall-associated receptor kinase 2 360 465 - -
Trre1g00761 668 SUPERFAMILY EGF/Laminin 289 324 - -
Trre1g00761 668 SUPERFAMILY Protein kinase-like (PK-like) 373 659 IPR011009 -
Trre1g00761 668 Pfam Calcium-binding EGF domain 289 320 IPR001881 GO:0005509
Trre1g00761 668 Gene3D Phosphorylase Kinase; domain 1 355 465 - -
Trre1g00761 668 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 661 IPR045274 GO:0007166
Trre1g00761 668 FunFam Fibrillin 2 285 328 - -
Trre1g00761 668 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Trre1g00761 668 CDD EGF_CA 289 323 - -
Trre1g00761 668 ProSiteProfiles Protein kinase domain profile. 390 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00761 Trre-Chr1 5758672 5761286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00761 1 661 Receptor kinase-like Gene Family AT1G21230 43.954 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00761 Pkinase 9.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00761 - - tpra:123893715 1169.07