Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00759 ATGCATCCATTAATAATGGTTGCTGCATTATTCCTGTTGGTAGAAGCAGTTGCATTTGATCAACCCCAACAAGTCCTACCAGGCTGCAATTACACTTGTGGAGATATACAAATTCCATATCCATTTGGCATAGGAAATTCAACAACACAAGATCATACTCCATGTTACATGGATTCCAAATTTAATCTCACTTGTGTAAACAATTCGACATTAATCAGTGGTAAGCGTATCCAAGTCCTAGACATAAATCCCAAAGGTCAAATGGTAATGAATTTTTTTGTCTCGCATCTCTGTACTAATAGTAATAATACTGAAGAAGCGAATACACCTTTTCTCATAGTTCCTTCTCTCACAGTTTCAAGCACAGAAAACAAATTCATAACTGTTGGTTGCGACAGTTACGGATATCTCAACAGTAATTTCAATGGTGCCACTTATTCAACAGGGTGCTTAACAAGGTGTTATGATTTTGATCCTAAAATGGTAATTGGGAATAACACTGGAAAATGCACAGGCTTAGGGTGTTGCCAAGTGGATATTCCTCCACTTATGAAAAATATCACTATACAGACATTCAAATTCCCAACTTCTACAACCTCTCAGGAAGATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGAGCATATAAATAATCTACCTAATCAAACTTTCCCCTTGGTTGTTAATTGGGCTATTACAAGTGAATCATGTCAAATAGCACAAACTACAACTAGCTACGCCTGCAAGGAAAATAGTGAATGTGTCGATGATGATTTAGATTATGACGGTTACAGATGCAAATGTTCGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGTTGCACAGACATTGACGAATGTGCAACAAATTTACATGGATGCAAAAACAGCGCAAATTGTAACAACACTGCTGGGAATTACACTTGTTTCTGTCCTGTGGGCCAAACCGGAGATGGAACAAAAGAAGGAGGGTGCCAACTACCTGATGGAAATGCATATCCAATAGTACCTACTATCCTTGGAGTGGGAGCAGCATTAATTGTTCTATTTGTGGGGATAATTTTCACCTTAATATACCAAAAGAGGAAACTTACCAAATTGAAAGAGAAATTCTTTAGGCAGAATGGTGGTTCTATTTTGGAACAGAAACTTCTTCAAAGAAAAGATTCATCTCAAATAGCTAATATTTTTAAAGAAAATGAACTAAGGAAAGCCACTAACAACTATGACGAGAGCTTAATCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTAGATGATAATAGAATTGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAGATTGAGCAATTCATTAACGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACACACAAGGTAAAGTGAATAATCAAACTTGGAAAATTCGTCTTAAGATAGCAGCAGAGGTAGCCGGAGCTTTGTCATATCTACATTCAGCGGCCTCAATACCAATTATCCACAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGTACCAGCACTGCCAAAGTATCAGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGCGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAATGTGTTTGATGTCATTCAAGAAGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTAGAGGGAATGAGGTTAGTGGATAAGCATTCTTGGATCAACGAAGACCTAAATGTAGCGGAGAGTCACTACTTGCTTCATGAACCATCATCTAGCATTTATGAACTTGGTGATAGCAGCAAACGTGGAGATATTGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 2244 0.3806 MHPLIMVAALFLLVEAVAFDQPQQVLPGCNYTCGDIQIPYPFGIGNSTTQDHTPCYMDSKFNLTCVNNSTLISGKRIQVLDINPKGQMVMNFFVSHLCTNSNNTEEANTPFLIVPSLTVSSTENKFITVGCDSYGYLNSNFNGATYSTGCLTRCYDFDPKMVIGNNTGKCTGLGCCQVDIPPLMKNITIQTFKFPTSTTSQEDCSYSFIAKQGSYNFSVEHINNLPNQTFPLVVNWAITSESCQIAQTTTSYACKENSECVDDDLDYDGYRCKCSEGFEGNPYLPGGCTDIDECATNLHGCKNSANCNNTAGNYTCFCPVGQTGDGTKEGGCQLPDGNAYPIVPTILGVGAALIVLFVGIIFTLIYQKRKLTKLKEKFFRQNGGSILEQKLLQRKDSSQIANIFKENELRKATNNYDESLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTQGKVNNQTWKIRLKIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTSTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRSLAMHFLSCLKKDNVFDVIQEGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLVDKHSWINEDLNVAESHYLLHEPSSSIYELGDSSKRGDIGYDSLKDHVLIALDDGR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00759 747 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Trre1g00759 747 ProSiteProfiles Protein kinase domain profile. 416 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00759 747 SUPERFAMILY EGF/Laminin 290 325 - -
Trre1g00759 747 SMART serkin_6 416 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00759 747 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Trre1g00759 747 FunFam Wall-associated receptor kinase 2 492 709 - -
Trre1g00759 747 CDD STKc_IRAK 422 689 - -
Trre1g00759 747 SMART egf_5 242 289 IPR000742 -
Trre1g00759 747 SMART egf_5 293 333 IPR000742 -
Trre1g00759 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 694 IPR045274 GO:0007166
Trre1g00759 747 Pfam Calcium-binding EGF domain 290 327 IPR001881 GO:0005509
Trre1g00759 747 SUPERFAMILY Protein kinase-like (PK-like) 399 687 IPR011009 -
Trre1g00759 747 Gene3D Transferase(Phosphotransferase) domain 1 492 707 - -
Trre1g00759 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Trre1g00759 747 FunFam Wall-associated receptor kinase 2 386 491 - -
Trre1g00759 747 Gene3D Phosphorylase Kinase; domain 1 381 491 - -
Trre1g00759 747 CDD EGF_CA 290 325 - -
Trre1g00759 747 SMART egfca_6 290 333 IPR001881 GO:0005509
Trre1g00759 747 FunFam Fibrillin 2 286 329 - -
Trre1g00759 747 Pfam Protein tyrosine and serine/threonine kinase 422 686 IPR001245 GO:0004672|GO:0006468
Trre1g00759 747 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524
Trre1g00759 747 ProSitePatterns Calcium-binding EGF-like domain signature. 290 316 IPR018097 GO:0005509
Trre1g00759 747 Gene3D Plasmodium vivax P25 domain 233 336 - -
Trre1g00759 747 Pfam Wall-associated receptor kinase galacturonan-binding 29 88 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00759 Trre-Chr1 5753304 5756060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00759 1 747 Receptor kinase-like Gene Family AT1G21230 43.890 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00759 PK_Tyr_Ser-Thr 2.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00759 - - tpra:123893723 1380.93