Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00754 ATGAATCTGAAGGTCATGCAAGTATTACTATTAATTTTAATGGTTGCTGCATTTGCCCTGTTGGAAGACACAATTGCAGCTGATCAACCCCAACAACAAGTCCTACCAGGCTGCAATAACACTTGTGGAGATATACTAGTTCCATATCCATTTGGCATGGGATATTCAACAACACAAGATCATACACCATGTTACATGGATTCCAAATTTGAGCTCACTTGTGTAGACAACTCAAAATTAATCCGTGGTAAGAATATCGAAGTCCTAAACTTAACCCAAGGTCAAATGGTAATGAATTTTTTTGTCTCACATCTTTGTCCTGATAGTAATAATACTGAAGAAGCGAATCAACCTTTTCTCAGAGTTCCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACTGTTGGTTGCGACAGTTACGGATATCTCAACAGTAATTTCAATGGTGCCACTTATTCAACAGGGTGCTTAACAAGATGTTATGGTTTTGATCTTGAAATGGCAATTGGGAAAAGTACTGGAAAATGCACAGGTTTAGGGTGTTGCCAAATAGATATTCCTCCACTCATGAAAAATATCACTATACAAACATTTAAATTCCCAAATTCTACACAATCTCAAGAAGGTTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGAGCATATAAATAATCTACCTAATCAAACTTTCCCCTTGGTGGTTAACTGGGCTGTTACAAATGAATCATGTCAAATAGCGCGAACTACAGATAGCTATGCCTGCAAGGAAAATAGTGAATGTGTCCATGATGATCCAGATTATGACGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTAACGAATGTATAACAAATAAACATGGATGCAAAAGTAGCGCAAATTGTCATAACACTCCTCCTGGGAGTCACACCTGTTTTTGTCCTGTGGGGCAAACCGGAGATGGAACAAAGGAAGGAGGGTGCCAAATACCTGAACTACCTGATGGAAATGCATATCCAATTTTACCTACTGTCCTTGGAGTAGGAGCAGCAATTATTGTTCTATTTGTGGGGATAATTTCCTTCTTAGTATACCAAAAGAGGAAAATTACCAAATTGAAAGAGAAATTCTTTAGGCAGAATGGTGGTTCTATTTTGGAACAGAAACTTCTTCAAAGAAAAGACTCATCTCAAGTAGCTAATATTTTCAAAGAAAATGAACTAAGGAAAGCAACCAACAATTATGACGAGAACTTAATCATTGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTAGATGATAATAGAATTGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAGATTGAGCAATTCATTAACGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACAAACAAAGTAATAAGGTGAATAATGAATCATGGAAAATTCGTCTTAAGATAGCAACAGATGTAGCTGGAGCTTTATCATATCTACATTCAGCTGCTTCAATAGCAATCATCCACAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAGCCAACACTGCCAAAGTAGCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACCGAAAAAAGTGATGTATATAGCTTTGGCGTAGTTCTTGTGGAGCTGCTGACAGGGGAGAGACCTTTTAGTTTTGGTAAGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGAAAATGTATTTGAAATTATTCAAGATGGTATGTTGAATGAAGAAAACAAACAAGAGATGAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCCTGGATCAACGAAGACCTAAATGTAGAGGAGAGTCGCTACCTGCTTCATGAATCATCATCTAGCATTTATGAACTTGGTGATAGCAGCAAACGCGGAGATATTGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCATGGACGATGGAAGATGA 2283 0.3806 MNLKVMQVLLLILMVAAFALLEDTIAADQPQQQVLPGCNNTCGDILVPYPFGMGYSTTQDHTPCYMDSKFELTCVDNSKLIRGKNIEVLNLTQGQMVMNFFVSHLCPDSNNTEEANQPFLRVPSFTISSTENKFITVGCDSYGYLNSNFNGATYSTGCLTRCYGFDLEMAIGKSTGKCTGLGCCQIDIPPLMKNITIQTFKFPNSTQSQEGCSYSFIAKQGSYNFSVEHINNLPNQTFPLVVNWAVTNESCQIARTTDSYACKENSECVHDDPDYDGYRCKCLEGFEGNPYLPGGCTDINECITNKHGCKSSANCHNTPPGSHTCFCPVGQTGDGTKEGGCQIPELPDGNAYPILPTVLGVGAAIIVLFVGIISFLVYQKRKITKLKEKFFRQNGGSILEQKLLQRKDSSQVANIFKENELRKATNNYDENLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHKQSNKVNNESWKIRLKIATDVAGALSYLHSAASIAIIHRDVKSDNILLDGANTAKVADFGASRLVPLDQTEIATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGKPEERRSLAMHFLSCLKKENVFEIIQDGMLNEENKQEMKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINEDLNVEESRYLLHESSSSIYELGDSSKRGDIGYDSLKDHVLIAMDDGR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00754 760 SUPERFAMILY EGF/Laminin 296 334 - -
Trre1g00754 760 SMART serkin_6 428 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00754 760 SUPERFAMILY Protein kinase-like (PK-like) 410 700 IPR011009 -
Trre1g00754 760 SMART egf_5 250 297 IPR000742 -
Trre1g00754 760 SMART egf_5 301 342 IPR000742 -
Trre1g00754 760 Gene3D Transferase(Phosphotransferase) domain 1 504 722 - -
Trre1g00754 760 Gene3D Laminin 249 300 - -
Trre1g00754 760 FunFam Wall-associated receptor kinase 2 504 722 - -
Trre1g00754 760 CDD EGF 301 336 - -
Trre1g00754 760 Gene3D Laminin 301 341 - -
Trre1g00754 760 CDD STKc_IRAK 434 702 - -
Trre1g00754 760 Gene3D Phosphorylase Kinase; domain 1 393 503 - -
Trre1g00754 760 FunFam Fibrillin 2 294 338 - -
Trre1g00754 760 Pfam Protein tyrosine and serine/threonine kinase 433 699 IPR001245 GO:0004672|GO:0006468
Trre1g00754 760 SMART egfca_6 298 342 IPR001881 GO:0005509
Trre1g00754 760 ProSitePatterns Protein kinases ATP-binding region signature. 434 457 IPR017441 GO:0005524
Trre1g00754 760 FunFam Wall-associated receptor kinase 2 398 503 - -
Trre1g00754 760 Pfam Wall-associated receptor kinase galacturonan-binding 38 94 IPR025287 GO:0030247
Trre1g00754 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Trre1g00754 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 708 IPR045274 GO:0007166
Trre1g00754 760 ProSiteProfiles EGF-like domain profile. 298 337 IPR000742 -
Trre1g00754 760 ProSiteProfiles Protein kinase domain profile. 428 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00754 Trre-Chr1 5705202 5707981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00754 6 760 Receptor kinase-like Gene Family AT1G21230 43.995 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00754 PK_Tyr_Ser-Thr 6.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00754 - - tpra:123893723 1300.42