Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00753 ATGAAGGCGAAGCATGTGTTAATGGTTGCTGCATTAACCATGATGGTAGGAATAGTTGTAGTTGATTCAGAACCAAATACCTGCAGTCACACTTGTGGAAATGAAACAATTGAATATCCGTTTGCCGTAGACATCAACAACAACGCTTCATCGGATTGTTTCTCGGATGGTAGTTTAATTCAGCTCAATTGCACTGAATCCAAATTATACGTTGGTAACATGCCGGTGTTAAACATAAGCATATCCACAGCTCAAATCGATGTGTTATTTTTCGTCTCTCAGTATTGTGGTACTGGTGACGGTAATTATACTAAAAATACGCCCTCATTTCATAGTGGTTCATATACCATTTCAAGCAAAGAAAACAAGTTCCTAACTATTGGTAATAACAGTTTCGGTTACCTCAACAGTTACAATGATAACAATACATATTCAACGGGGTGCATAACAAGATCTTTTGGTGATCTAAGATCTATTGATAATGGAACATGTTCGGGCATAGGGTGTTGCCAAGTTGATATTCCTCCTCGAATGTGGAATATAAGTATAGAAGCTTCTAATTTCAACAAAAATACAGCAGATGTTTGTAGCTATTCATTTGTTGTCAAGAATGGCAACTATACTTTTTCAGCCACTGATATAACAGAGGGTTTACGTGTCAACCAATTACCTATGGTTCTTGACTGGACCGTTGGTAACTTAACCGAAAACTGCAGTACAGCTTCTTCCAACAATAATGGAGTCAACTATATGTGCAAGAGCAATAGCGATTGTCATGACAACGACACAACTTTTGGTTATCTATGCAGATGCAAAGATGGTTATGATGGAAATCCCTACCATCCCCTTGGCTGCACAGATACTAACGAATGTGAAGACGGCTCACACAGATGCAAAACTAAAGCAAATTGTAAGAACATTGACGGGGATCACACATGTGTCTGTCCTAAGGGGTATTCTGGAGATGGAACAAAGGACCAAGGGTGCCAACCACCTGCAAATTTAATAGTACTATATACTGTCCTTGGAGTCGGAGGAACATTTATTTTTCTTTTTCTGGTGACATTCTCGTACATAATATACCATAAGAGGAAATCCATCAAATTGAGAGAGAAATTCTTTGAGCAGAATGGTGGTTTAATTTTGAAACAAAAACTCTCCATCAGAGAAGACTCCTCCTCTCAAACAACTCAAAGTGCTCAAATATTCTCACGAGATCAACTAAACAGGGCCACCAAAAACTTTGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATGATAAAAGAATCGTGGCTATCAAAAAATCAAAAATAATAGATAGAAGCCAAATCGATCAATTCATTAATGAGGTGATTGTTCTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTGGGGTGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTATGAATTTGTAATCAATGGTACCCTTTCTGGTTTTATACACACACAAGGTGATAAGGTGAATAATGAATCATGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCATCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGATAGTTCTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCGGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAACTGATAATGTGTTTGAAGTTATTCAAGAAGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCAGTTCTTGCGGCAAAGTGTGTGAGACTTAGAGGGGAGGAAAGACCTAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAATGATGACTTAAATGTAGAGGAGAGTCGGTACTTGCTTCATGAATCATCATCCAGCATTTATGAAACTGGTGATAGCAGCATTCATGGAGATATTGGATATGACAGCTTGAAAGATCAGCCACTAATTGTCTTGGATGATGGAAGATAA 2244 0.3864 MKAKHVLMVAALTMMVGIVVVDSEPNTCSHTCGNETIEYPFAVDINNNASSDCFSDGSLIQLNCTESKLYVGNMPVLNISISTAQIDVLFFVSQYCGTGDGNYTKNTPSFHSGSYTISSKENKFLTIGNNSFGYLNSYNDNNTYSTGCITRSFGDLRSIDNGTCSGIGCCQVDIPPRMWNISIEASNFNKNTADVCSYSFVVKNGNYTFSATDITEGLRVNQLPMVLDWTVGNLTENCSTASSNNNGVNYMCKSNSDCHDNDTTFGYLCRCKDGYDGNPYHPLGCTDTNECEDGSHRCKTKANCKNIDGDHTCVCPKGYSGDGTKDQGCQPPANLIVLYTVLGVGGTFIFLFLVTFSYIIYHKRKSIKLREKFFEQNGGLILKQKLSIREDSSSQTTQSAQIFSRDQLNRATKNFDESLIIGKGGFGTVFKGFLDDKRIVAIKKSKIIDRSQIDQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVINGTLSGFIHTQGDKVNNESWKTRLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGIVLVELLTGERPFSFGRPEERRSLAMHFLSCLKTDNVFEVIQEGMLNEENKQEIKEVAVLAAKCVRLRGEERPSMKEVAMELEGMRLMDKHSWINDDLNVEESRYLLHESSSSIYETGDSSIHGDIGYDSLKDQPLIVLDDGR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00753 747 SUPERFAMILY EGF/Laminin 287 322 - -
Trre1g00753 747 FunFam Wall-associated receptor kinase 2 491 709 - -
Trre1g00753 747 Gene3D Laminin 281 329 - -
Trre1g00753 747 ProSiteProfiles EGF-like domain profile. 287 330 IPR000742 -
Trre1g00753 747 ProSiteProfiles Protein kinase domain profile. 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00753 747 SMART serkin_6 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00753 747 SMART egf_5 290 330 IPR000742 -
Trre1g00753 747 SMART egf_5 237 286 IPR000742 -
Trre1g00753 747 FunFam Wall-associated receptor kinase 2 381 490 - -
Trre1g00753 747 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Trre1g00753 747 Gene3D Phosphorylase Kinase; domain 1 378 490 - -
Trre1g00753 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 695 IPR045274 GO:0007166
Trre1g00753 747 CDD STKc_IRAK 421 689 - -
Trre1g00753 747 Pfam Protein tyrosine and serine/threonine kinase 421 686 IPR001245 GO:0004672|GO:0006468
Trre1g00753 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Trre1g00753 747 CDD EGF_CA 287 322 - -
Trre1g00753 747 Gene3D Transferase(Phosphotransferase) domain 1 492 703 - -
Trre1g00753 747 Pfam EGF domain 291 324 IPR024731 -
Trre1g00753 747 SUPERFAMILY Protein kinase-like (PK-like) 393 687 IPR011009 -
Trre1g00753 747 SMART egfca_6 287 330 IPR001881 GO:0005509
Trre1g00753 747 FunFam Fibrillin 2 282 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00753 Trre-Chr1 5691173 5694163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00753 1 747 Receptor kinase-like Gene Family AT1G21250 42.689 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00753 PK_Tyr_Ser-Thr 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00753 - - mtr:25481909 1019.99