Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00752 ATGATGGTAGGAATAGTTGCAGTTGATTCGGCACCAGATACCTGCAGCCAGACCTGTGGAAATGTAGAGATTCCATATCCATTTAGCATAAACATCATCAACAACAACACTTCATCTGATTGTTTATCGGGTCGTAGATTAATTAAGCTCAATTGCACCGAGTCCAAATTATACGCTGGTACTAACATGCCAGTGTTAGACATAAACATCACCGCAGCTCAAATCGAAGTGTTATTTTACGTCTCTAACTATTGCAGTGATGATAATGAGACTACAGCCACACTTCGGAGTCATACATATACCATTTCAAGCAAAGAAAACAAGTTCCTAACTGTTGGCAATAACAGTTTTGGTATTTATACGAGTTACCGTGATAACTATACCTATTCAACAGGGTGCTTAACAAGTTCTTTTGGTGACCCAAAGTCGATTGATAATGGAACATGTTCGGGTATAGGGTGTTGCCAAAATGATATTCCTCCTCGAATGCAGAATATAAGTATAGGAGTTTCTAATTTCAACAATAATACATCGGATATTTGTAGCTATGCATTTGTTGTCAAAAATGGTAACTATAGTTTTTCCTCCACTCATTTATCAGAAGGTTTACCTTTCGAGCGATTACCTGTGGTTCTTGACTGGACTGTTGGTAAGGACGAAAACTGCAGTACAGCTTATAATAGAGTCAACTATGCCTGCAAGAGCAACATGACAATGACACAGCTTTCGGTTACCTATGCAGATGCAATCGAGGTTATGAAGGAAATCCCTACCATCCCCTTGGCTGCACAGATATTAACGAATGTGAAGACGGCTCACACAAATGCAAAACTAAAGCAAATTGACCAAGGGTGCCAACCACCTGCAAATTTAATAGTACTATATACTGTCCTTGGAGTCGGAGGAACATTTATTTTTCTTTTTCTGGTGACATTCTCGTACATAATATACCATAAGAGGAAATCCATCAAATTGAGAGAGAAATTCTTTGAGCAGAATGGTGGTTTGATTTTGAAACAAAAACTCTCCACACGAGAAGACTCCTCCTCTCAAACAACTCAAAGTGCTAAAATATTCACACGAGATCAACTAAACAGGGCCACCAAAAACTTTGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATGATAAAAGAATCGTGGCTATCAAAAAATCAAAAATAATAGATAGAAGTCAAATCGATCAATTCATTAATGAGGTGATTGTTCTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTGGGGTGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTACCAATGGTACCCTTTCTGGTTTTATACACACACAAGGTAATAAGTTGAATAATCAATCATGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCTCTGTCATATCTGCACTCATCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGCGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAATGTGTTTGATGTCATTCAAGAAGGTATGTTGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTAGAGGGAATGAGGTTAGTGGATAAGCATTCTTGGATCAACGAAGACCTAAATGTAGCGGAGAGTCACTACTTGCTTCATGAACCATCATCTAGCATTTATGAACTTGGTGATAGCAGCAAACGTGGAGATAATGGATATGACAGCTTGAAAGATCAGGAACTAATTGTCTTGGATGATGGAAGATGA 2112 0.3883 MMVGIVAVDSAPDTCSQTCGNVEIPYPFSINIINNNTSSDCLSGRRLIKLNCTESKLYAGTNMPVLDINITAAQIEVLFYVSNYCSDDNETTATLRSHTYTISSKENKFLTVGNNSFGIYTSYRDNYTYSTGCLTSSFGDPKSIDNGTCSGIGCCQNDIPPRMQNISIGVSNFNNNTSDICSYAFVVKNGNYSFSSTHLSEGLPFERLPVVLDWTVGKDENCSTAYNRVNYACKSNMTMTQLSVTYADAIEVMKEIPTIPLAAQILTNVKTAHTNAKLKQIDQGCQPPANLIVLYTVLGVGGTFIFLFLVTFSYIIYHKRKSIKLREKFFEQNGGLILKQKLSTREDSSSQTTQSAKIFTRDQLNRATKNFDESLIIGKGGFGTVFKGFLDDKRIVAIKKSKIIDRSQIDQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVTNGTLSGFIHTQGNKLNNQSWKTRLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRSLAMHFLSCLKKDNVFDVIQEGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLVDKHSWINEDLNVAESHYLLHEPSSSIYELGDSSKRGDNGYDSLKDQELIVLDDGR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00752 703 FunFam Wall-associated receptor kinase 2 337 446 - -
Trre1g00752 703 CDD STKc_IRAK 377 645 - -
Trre1g00752 703 FunFam Wall-associated receptor kinase 2 447 665 - -
Trre1g00752 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Trre1g00752 703 Gene3D Phosphorylase Kinase; domain 1 333 446 - -
Trre1g00752 703 SUPERFAMILY Protein kinase-like (PK-like) 349 643 IPR011009 -
Trre1g00752 703 Pfam Wall-associated receptor kinase galacturonan-binding 15 77 IPR025287 GO:0030247
Trre1g00752 703 ProSitePatterns Protein kinases ATP-binding region signature. 377 400 IPR017441 GO:0005524
Trre1g00752 703 ProSiteProfiles Protein kinase domain profile. 371 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00752 703 Pfam Protein tyrosine and serine/threonine kinase 376 642 IPR001245 GO:0004672|GO:0006468
Trre1g00752 703 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 10 650 IPR045274 GO:0007166
Trre1g00752 703 Gene3D Transferase(Phosphotransferase) domain 1 447 663 - -
Trre1g00752 703 Pfam Wall-associated kinase 147 220 IPR013695 GO:0004674|GO:0016020
Trre1g00752 703 SMART serkin_6 371 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00752 Trre-Chr1 5686179 5689074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00752 8 703 Receptor kinase-like Gene Family AT1G21230 41.565 2.90e-161 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00752 PK_Tyr_Ser-Thr 2.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00752 - - mtr:25481909 889.412