Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00749 ATGGGACATTCAAAGAAAGAAGAAGAAAAAGCTGAAAGAATAATTCGAGGTTTATTAAAACTTCCCGAAAATCGAAGATGCATCAATTGCAATACTTTGGGACCACAATATGTTTGTACAACTTTCTCAACATTTGTCTGCACAAATTGCAGTGGACTACATCGAGAGTTCACGCATCGAGTAAAATCCGTGTCAATGGCAAAATTTACACCAGAAGAAGTTACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAACAAATTTATTTTAAAGGTTGGGATCCTCTACGACATTCTTATCCCGATTCCAGTAATATGCACAAACTTAGGGAATTTATCAAGCATGTCTACGTGGATAGAAAGTATACCGGCGAAAGAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAAGAGGAGTCCAATGAGAAGCCGAAAAGTAGTTCATTTCGATTAGAGTTCATAAGTCCGAAGTCAAGTCCTGCTACAAGAAGTTCCAGTGCAAGAAGCGATGACGCGAGTGTTAGATATCTATATGATGAAAGTAGAAGTCCTAAATATGTACAAAAATATACAAGGAACGGAGGATTCAGTAGAAGTCCTATAAAGTTTGAGGTTGTTGATGACAGATTTCGAGACGATGAATATAGAAACCGCAGACAATCGAATCTTGAATCAAAGTTAAGACAACTTTCACTTGATAGTCATAAGAATGTGGACAGATCCCAAGCTCCGGTTCAACCATCTTCGGGTGAAATGACGATGCGGAATGATTCATCTTCACAAGTTACAACTACTGGTGGAGAAGGTTCTGTTGAGGGAAAACCATCTGAACAAAAGAGTAATAAATCTCAAGCTTCTGAAACTGCTATTGTAGCAGTAGAAGAAACACCAAGTATGAAACAAGAAAGTGAAAATAATTGGGCCTCATTTGAAACTTCTACAAAGGAAATTGTTCCTGAAACTTCAAACACCAACACCATGAAATCTCCTACAACAGAACCAACACCTGAGGCAAAAATTTCAAGTCCTTTAGACCTTTTACTTCTTGAATTGTCAGGCTCTTTTGCTCCAGCCAGTGGCGAAAATGTTTCGACAACTTCAACGGCAGAAAAGGCCTCTACATTGGATTTTCCATCTACTTCAATGGAGGAGACAAATTCATCAGCTTCTGAGCTAGCACAACCTTCTAATGAAGCTACTCCACCACAATCTGAGTTACTTGAGACAGAAGATTCCATTGAAGTTTCATATGCACATAAAGCACAAAAAGAAGATTCCATTGAAGTTTCACATGCAAATAAACCACAAACAGAAGATTCAATTGAAGTTTCACATGCACATAAACCACAAACCGAAGGTTCCGTTGAATTTTCACATGCACACAAACCAACAACCATGCAATCAACACAACCAACAGAATCACCAAATAAAGATGTAGCTTCAAATAATGAGCCGTCATTTTCTTCTAATACACATGAATCATCATCACATGCTTTCCATGAACTTAATTCTCAAACCGCCTCGAATCCTACTCAAGATACCAGACTTGGTGTTAGTTCCCAGCCTAGCACAGTAGAAACCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTACAACAAGGTACTTTTCAGGTCCTGCACCACATCCAAGTTGGCAGAATCTTCAATCTCATGTCATGAGATATGGCATGCAATATTATCCTAATGCAGTGCCTCCTCACACAGCACTTCCCATTGCACCAAAATCCATTAACCCTTTTGAAGTAACTGAAGTGAGAGGTTTATCTCATGCATCATCAGTTCCTAGTTTGACATCAATGCATGGTGTGCTGCCAGCTACATCACATAGAACAGGATTAATGCATACTTCTTCAAGTCTTGGTTCTTTAGATACAATGATGCCTCAGTCCACAAGTTATGCATCCCCAATTACTGGTGTGTACTTTGATCAAGTTAATAATGAAGATCAATATAATAGATCAAAAATAGTAAACACCTACAATAGTGACATAACTGGTTTTGGATCACTAGACACAATTCAACAACCATATGGGGCATATGGCACACTTGGAATTCCAAATTCTTTTTCCAATACAAGAAGAAATCCATTTGAATAG 2130 0.3845 MGHSKKEEEKAERIIRGLLKLPENRRCINCNTLGPQYVCTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPLRHSYPDSSNMHKLREFIKHVYVDRKYTGERSQENLPRIKLNDKEESNEKPKSSSFRLEFISPKSSPATRSSSARSDDASVRYLYDESRSPKYVQKYTRNGGFSRSPIKFEVVDDRFRDDEYRNRRQSNLESKLRQLSLDSHKNVDRSQAPVQPSSGEMTMRNDSSSQVTTTGGEGSVEGKPSEQKSNKSQASETAIVAVEETPSMKQESENNWASFETSTKEIVPETSNTNTMKSPTTEPTPEAKISSPLDLLLLELSGSFAPASGENVSTTSTAEKASTLDFPSTSMEETNSSASELAQPSNEATPPQSELLETEDSIEVSYAHKAQKEDSIEVSHANKPQTEDSIEVSHAHKPQTEGSVEFSHAHKPTTMQSTQPTESPNKDVASNNEPSFSSNTHESSSHAFHELNSQTASNPTQDTRLGVSSQPSTVETKSSGRMELPEDLFTTRYFSGPAPHPSWQNLQSHVMRYGMQYYPNAVPPHTALPIAPKSINPFEVTEVRGLSHASSVPSLTSMHGVLPATSHRTGLMHTSSSLGSLDTMMPQSTSYASPITGVYFDQVNNEDQYNRSKIVNTYNSDITGFGSLDTIQQPYGAYGTLGIPNSFSNTRRNPFE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00749 709 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Trre1g00749 709 MobiDBLite consensus disorder prediction 359 412 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 459 532 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 358 536 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 129 148 - -
Trre1g00749 709 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre1g00749 709 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre1g00749 709 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre1g00749 709 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Trre1g00749 709 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre1g00749 709 PANTHER ARFGAP/RECO-RELATED 1 709 IPR044820 GO:0005096
Trre1g00749 709 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Trre1g00749 709 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Trre1g00749 709 MobiDBLite consensus disorder prediction 414 434 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 219 237 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 129 173 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 149 173 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 300 340 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 219 343 - -
Trre1g00749 709 CDD ArfGap_AGFG 12 122 - -
Trre1g00749 709 MobiDBLite consensus disorder prediction 238 293 - -
Trre1g00749 709 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00749 Trre-Chr1 5668246 5672450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00749 11 89 C2H2 Transcription Factor Family AT4G05330 37.349 4.59e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00749 - - tpra:123893767 1132.47