Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00743 ATGAATATTGAAAATGGTGAAAATGTGAGAGTGACTCGTGCAAGAGCTAGAGCCATGGAAGCATCTTCAAGAAATGAAAAAGCTGTTGGACTTAGAGATATAACCAACATTTCAACAAAATCTCATCATAAGCGTATTCAAACTTCGAATTTTCAGAAGAGTGAAGGTAATAAGAAGAGAAAGACTAAGACAACTTCAGAAGATCATGTACCCTTACAAGTTGTGACAACCGAAGAGGATGTTAAGGCAAAGTTAGCTGTAGATTCATCAATGATGATGATGGAAAAGTCACTGCAAGTGCAACCTTCTGTCGAAAATCCACTACTTTCAATGCAGGATTTTGTCGGTTCTCCGGATAAAGACATAAGTATGATATGTGAGAAACTAAAAGACTCAGTTGACTTGGGAATTGTGGACATTGATTCAAAGTTAAAGGATTCTCTTTTTTGGACTTCTTATGCCCCTGATATATACAATAGTATTTATGTTAGAGAGTGTGAAAGGAGACCATCGGCTGATTACATGGAAAAGTTGCAGCAATACATCACTCCAACTATGCGGGGAATTCTTGTTGATTGGCTTGTCGAGGTTACTGAGGAATATCAGCTAGTTCCAGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCTCAACGTTTGGTTACAAAACAAACGCTCCAGTTGCTCGGTATCACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTGTGCCTACTCCATTACAAGATTTATGCGACATCACAGATAATACATACTCGAAACAACAGGTCTTGAAAATGGAGAAAGAGGTTCTAAATCTTCTGCATTTCCAATTAGCTGTTCCAACAATCAAAACATTTCTCAGGAAGTTCATTGTTGTAGCACAATCTGCTTTCAAGGTTGTTTATGATGAACTGGAATTCATTGCAAACTATTTAGGAGAGCTAGCTCTTGTTGAATACAGCTTCTTGCAGTTTCGACCTTCCAAGATAGCTGCATCTGCGGTTTTTCTTGGCAGATGGACCCTCGACCAATCAGAACATCCATGGAATCCAACTCTAGAGCACTATACAAATTACAAAGCTTCTGAGCTGAAAACTACTGTCCTTGCACTGCTGGATTTGCAACTTAATACCAAAGGCTGTTGTCTGGCTGGTGTACACGACAAATATAACCAACAGAAGTTCCAAAGGGTGGCGAACTTGATTCCGAAACCTGTGGAATCTCTTTTTTAG 1245 0.3904 MNIENGENVRVTRARARAMEASSRNEKAVGLRDITNISTKSHHKRIQTSNFQKSEGNKKRKTKTTSEDHVPLQVVTTEEDVKAKLAVDSSMMMMEKSLQVQPSVENPLLSMQDFVGSPDKDISMICEKLKDSVDLGIVDIDSKLKDSLFWTSYAPDIYNSIYVRECERRPSADYMEKLQQYITPTMRGILVDWLVEVTEEYQLVPDTLYLAVNLIDRFLSQRLVTKQTLQLLGITCMLISSKYEEIVPTPLQDLCDITDNTYSKQQVLKMEKEVLNLLHFQLAVPTIKTFLRKFIVVAQSAFKVVYDELEFIANYLGELALVEYSFLQFRPSKIAASAVFLGRWTLDQSEHPWNPTLEHYTNYKASELKTTVLALLDLQLNTKGCCLAGVHDKYNQQKFQRVANLIPKPVESLF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00743 414 Pfam Cyclin, N-terminal domain 156 282 IPR006671 -
Trre1g00743 414 SMART cyclin_7 192 276 IPR013763 -
Trre1g00743 414 SMART cyclin_7 293 377 IPR013763 -
Trre1g00743 414 Pfam Cyclin, C-terminal domain 285 406 IPR004367 -
Trre1g00743 414 ProSitePatterns Cyclins signature. 187 218 IPR006671 -
Trre1g00743 414 SUPERFAMILY Cyclin-like 284 407 IPR036915 -
Trre1g00743 414 MobiDBLite consensus disorder prediction 35 69 - -
Trre1g00743 414 CDD CYCLIN_AtCycA-like_rpt2 285 399 - -
Trre1g00743 414 SUPERFAMILY Cyclin-like 146 282 IPR036915 -
Trre1g00743 414 Gene3D - 170 283 - -
Trre1g00743 414 FunFam Cyclin A1 272 404 - -
Trre1g00743 414 PANTHER CYCLINS 86 366 IPR039361 -
Trre1g00743 414 Gene3D - 156 404 - -
Trre1g00743 414 SMART Cyclin_C_2 285 408 IPR004367 -
Trre1g00743 414 MobiDBLite consensus disorder prediction 35 53 - -
Trre1g00743 414 PIRSF Cyclin_A_B_D_E 2 413 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00743 Trre-Chr1 5620752 5625047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00743 8 414 Core Cell Cycle Gene Families AT5G25380 49.541 2.53e-130 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00743 K06627 - gmx:100777132 482.256