Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00733 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAGCATTCGGAAGTTGCCGCGTCATATATCGAGACACAGTTAATTAAGGCGAGGGAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCCACAACCTCAGCAGTCACAACAACATCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGATGCAGATGCAACAGATGCTATTACAGAGGCAGCATCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAGCAGCATCAGCAACAACAACAGCAGCAGCAGCCGCAGCATCAGCAACAACAACAGCAGCAGCAACAACAACAGGGTAGAGATAGGGCTCATCTCTTGAATGGTGGCGGTGCAAACGGATTAGTTGGAAACTCTAGCACTGCAAATGCAATAGCAACGAAGATGTACGAGGAAAGGTTAAAAATTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCTTCAATATTGAAGTCATCAGCAGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCAATGTCGCCTCAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGATATAAAAACTGAGATTAATCCTGTTATAAACCCTAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCCGGATCAAATCAAGGTGGCAACAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGCTTACTCCAGCAACAAAAACCTTTCATACAGTCTCCACAGCCTTTTCATCAACTTCCAATGTTGACACCACAACATCAACAACAGCTTATGTTAGCTCAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAGTAATAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTAGGTGATGTAGTATCAAATGTTGGATCACCCCTTCAAGCAGGTGGACCTCCTTTTCCTCGTAGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAACATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGTGGTGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCGTTTCGAGGAAATGATCAGGTTTCAAAAAACCAGCCTGGAAGAAAGAGAAAGCAGCCAGTATCTTCTTCTGGTCCTGCGAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCATCAGGATCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATAGTAGTTCTTCTAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGGCAGATGTGGACCGCTTTGTTGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAGCAAAGTTGTTTGTACCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGCCACGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGCGTTTGGGATGTGGACAATCCTGGGTATTCCCTTCGTACCTTCACTGGCCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGCGCTAGAGTTTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAAATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCCTTGCATCTGTCAGTGAAGACTCTGTCAGGGTTTGGACTCTTGGATCTGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAACGGCAATAAGTTTCACTCATGCGTTTTCCATCCAACGTATTCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTATGGAACATGACCGAAAACAAAACGATGACTCTATCTGCTCACGATGGTCTTATTGCTGCACTGGCCGTCTCAACTGTAAACGGCTTAGTCGCCTCAGCCAGTCATGACAAGTTTGTCAAACTCTGGAAGTGA 2709 0.4529 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQHQQQQQQQQPQHQQQQQQQQQQQGRDRAHLLNGGGANGLVGNSSTANAIATKMYEERLKIPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKTEINPVINPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDDSRRLRMLLSNRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRSDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQPGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNSSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSYLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGKYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 745 IPR001680 GO:0005515
Trre1g00733 902 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 902 - -
Trre1g00733 902 Gene3D - 601 747 IPR015943 GO:0005515
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 695 - -
Trre1g00733 902 MobiDBLite consensus disorder prediction 150 174 - -
Trre1g00733 902 MobiDBLite consensus disorder prediction 423 460 - -
Trre1g00733 902 MobiDBLite consensus disorder prediction 236 257 - -
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 695 IPR001680 GO:0005515
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 703 741 - -
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 870 902 - -
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 785 825 IPR001680 GO:0005515
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 659 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 653 692 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 778 816 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 611 650 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 863 902 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 822 861 IPR001680 GO:0005515
Trre1g00733 902 SMART WD40_4 696 736 IPR001680 GO:0005515
Trre1g00733 902 MobiDBLite consensus disorder prediction 237 257 - -
Trre1g00733 902 MobiDBLite consensus disorder prediction 379 553 - -
Trre1g00733 902 Coils Coil 123 154 - -
Trre1g00733 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 902 IPR001680 GO:0005515
Trre1g00733 902 SMART Lish 8 40 IPR006594 GO:0005515
Trre1g00733 902 SUPERFAMILY WD40 repeat-like 612 902 IPR036322 GO:0005515
Trre1g00733 902 FunFam Transcriptional corepressor LEUNIG 746 902 - -
Trre1g00733 902 CDD WD40 614 902 - -
Trre1g00733 902 MobiDBLite consensus disorder prediction 471 553 - -
Trre1g00733 902 Pfam LisH 10 36 IPR006594 GO:0005515
Trre1g00733 902 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Trre1g00733 902 Pfam WD domain, G-beta repeat 619 649 IPR001680 GO:0005515
Trre1g00733 902 Pfam WD domain, G-beta repeat 658 692 IPR001680 GO:0005515
Trre1g00733 902 Pfam WD domain, G-beta repeat 865 902 IPR001680 GO:0005515
Trre1g00733 902 Pfam WD domain, G-beta repeat 699 736 IPR001680 GO:0005515
Trre1g00733 902 Pfam WD domain, G-beta repeat 781 815 IPR001680 GO:0005515
Trre1g00733 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre1g00733 902 Gene3D - 748 902 IPR015943 GO:0005515
Trre1g00733 902 MobiDBLite consensus disorder prediction 150 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00733 Trre-Chr1 5548773 5556343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00733 636 865 U-box Gene Family AT2G33340 31.707 5.09e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre1g00733 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00733 - - gmx:100779972 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00733 1 5548773 5556343 Trre5g05277 5 53744318 53751090 PCT