Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00732 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAGCATTCGGAAGTTGCCGCGTCATATATCGAGACACAGTTAATTAAGGCGAGGGAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCCACAACCTCAGCAGTCACAACAACATCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGATGCAGATGCAACAGATGCTATTACAGAGGCAGCATCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAGCAGCATCAGCAACAACAACAGCAGCAGCAGCCGCAGCATCAGCAACAACAACAGCAGCAGCAACAACAACAGGGTAGAGATAGGGCTCATCTCTTGAATGGTGGCGGTGCAAACGGATTAGTTGGAAACTCTAGCACTGCAAATGCAATAGCAACGAAGATGTACGAGGAAAGGTTAAAAATTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCTTCAATATTGAAGTCATCAGCAGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCAATGTCGCCTCAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGATATAAAAACTGAGATTAATCCTGTTATAAACCCTAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCCGGATCAAATCAAGGTGGCAACAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGCTTACTCCAGCAACAAAAACCTTTCATACAGTCTCCACAGCCTTTTCATCAACTTCCAATGTTGACACCACAACATCAACAACAGCTTATGTTAGCTCAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAGTAATAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTAGGTGATGTAGTATCAAATGTTGGATCACCCCTTCAAGCAGGTGGACCTCCTTTTCCTCGTAGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAACATACTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGTGGTGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCGTTTCGAGGAAATGATCAGGTTTCAAAAAACCAGCCTGGAAGAAAGAGAAAGCAGCCAGTATCTTCTTCTGGTCCTGCGAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCATCAGGATCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATAGTAGTTCTTCTAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTTGTTGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAGCAAAGTTGTTTGTACCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGCCACGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGCGTTTGGGATGTGGACAATCCTGGGTATTCCCTTCGTACCTTCACTGGCCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGCGCTAGAGTTTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAAATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCCTTGCATCTGTCAGTGAAGACTCTGTCAGGGTTTGGACTCTTGGATCTGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAACGGCAATAAGTTTCACTCATGCGTTTTCCATCCAACGTATTCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTATGGAACATGACCGAAAACAAAACGATGACTCTATCTGCTCACGATGGTCTTATTGCTGCACTGGCCGTCTCAACTGTAAACGGCTTAGTCGCCTCAGCCAGTCATGACAAGTTTGTCAAACTCTGGAAGTGA 2736 0.4521 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQHQQQQQQQQPQHQQQQQQQQQQQGRDRAHLLNGGGANGLVGNSSTANAIATKMYEERLKIPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKTEINPVINPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDDSRRLRMLLSNRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRSDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQPGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNSSSSKPLMMFGTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSYLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGKYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 834 IPR001680 GO:0005515
Trre1g00732 911 CDD WD40 623 911 - -
Trre1g00732 911 ProSitePatterns Trp-Asp (WD) repeats signature. 688 702 IPR019775 -
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 712 750 - -
Trre1g00732 911 SMART WD40_4 787 825 IPR001680 GO:0005515
Trre1g00732 911 SMART WD40_4 705 745 IPR001680 GO:0005515
Trre1g00732 911 SMART WD40_4 620 659 IPR001680 GO:0005515
Trre1g00732 911 SMART WD40_4 831 870 IPR001680 GO:0005515
Trre1g00732 911 SMART WD40_4 872 911 IPR001680 GO:0005515
Trre1g00732 911 SMART WD40_4 662 701 IPR001680 GO:0005515
Trre1g00732 911 MobiDBLite consensus disorder prediction 150 174 - -
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 879 911 - -
Trre1g00732 911 MobiDBLite consensus disorder prediction 423 460 - -
Trre1g00732 911 MobiDBLite consensus disorder prediction 236 257 - -
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 911 IPR001680 GO:0005515
Trre1g00732 911 Pfam WD domain, G-beta repeat 667 701 IPR001680 GO:0005515
Trre1g00732 911 Pfam WD domain, G-beta repeat 628 658 IPR001680 GO:0005515
Trre1g00732 911 Pfam WD domain, G-beta repeat 790 824 IPR001680 GO:0005515
Trre1g00732 911 Pfam WD domain, G-beta repeat 874 911 IPR001680 GO:0005515
Trre1g00732 911 Pfam WD domain, G-beta repeat 708 745 IPR001680 GO:0005515
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 704 IPR001680 GO:0005515
Trre1g00732 911 Gene3D - 592 756 IPR015943 GO:0005515
Trre1g00732 911 Gene3D - 757 911 IPR015943 GO:0005515
Trre1g00732 911 SUPERFAMILY WD40 repeat-like 621 911 IPR036322 GO:0005515
Trre1g00732 911 MobiDBLite consensus disorder prediction 237 257 - -
Trre1g00732 911 Pfam LisH 10 36 IPR006594 GO:0005515
Trre1g00732 911 Coils Coil 123 154 - -
Trre1g00732 911 SMART Lish 8 40 IPR006594 GO:0005515
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 754 IPR001680 GO:0005515
Trre1g00732 911 MobiDBLite consensus disorder prediction 471 554 - -
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 627 668 IPR001680 GO:0005515
Trre1g00732 911 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre1g00732 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 669 704 - -
Trre1g00732 911 MobiDBLite consensus disorder prediction 379 554 - -
Trre1g00732 911 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 911 - -
Trre1g00732 911 FunFam Transcriptional corepressor LEUNIG 755 911 - -
Trre1g00732 911 MobiDBLite consensus disorder prediction 150 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00732 Trre-Chr1 5548773 5556343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00732 645 874 U-box Gene Family AT2G33340 31.707 5.96e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre1g00732 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00732 - - gmx:100779972 1249.96