Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00727 ATGGAGAGCAATGAAGTATCAAGAGTTGATAGTTTAAGAAGATCAACAAGTAGTTCTAACATATGGAGGAACAATAGTATGGATGTTTTTTCAAAATCTGAACGTGAAGATGATGAAGAAGCACTTAAATGGGCTTCTATTGAGAGACTCCCTACATATCTTAGGATTAGAAGAAGTATACTTAATAATGAAGAAGTTGATATCAAAAACCTTGGATTAACTGAGAGAAAAGTTCTTTTAGAGAGACTTGTCAAAATTGCTGAAGATGATAATGAAAAGTTTTTGTTGAAACTCAAGGAAAGAATGGAAAGAGTTGGAGTTGATATTCCAACAGTTGAGGTAAGATTTGATCATGTAAATGTGGAAGCACAAGTTTATGTTGGAGGAAGAGCTTTACCTTCATTACTCAACTTCTTTGTTAATGTCTTAGAGGGATTCTTAAATTATCTTCATATTATTCCAAGTCCAAAGAAACCATTACATATTCTTCAGAATGTTAGTGGAATCATAAAGCCTCAAAGAATGACATTACTTTTGGGGCCACCTGGCTCTGGAAAGACCACTTTGCTTTTGGCCTTGGCTGGAAAACTTGCCAATGATTTGAAAAAATCTGGGAGAGTAACATACAATGGAGAAGGACTAGAAGAGTTTGTTCCACAAAGAACATCAGCTTATATAAGTCAATATGATAATCACATTGGAGAAATGACTGTTAGAGAAACACTTGCTTTCTCAGCAAGATGTCAAGGGGTTGGACATAATTATGATATGTTGACTGAATTACTCAGAAGAGAAAAAGAAGCAAAGATTAAACCAGATCCTGATGTTGATGCCTATATGAAGGCAGCAGCACTAGAAGGACAGCAGGCGAGCGTCGTAACCGACTATATTCTCAAGATTTTAGGACTTGAAATCTGTGCTGACATTATGGTAGGAGATGAAATGATAAGAGGTATCTCAGGAGGACAGAAAAAGAGAGTAACAACAGGTGAGATGCTGGTTGGACCTATAAAGGTGTTGTTCATGGATGAAATATCAACTGGTTTGGACAGTTCAACAACTTTTCAAATAATCAGCTCAATCAGACAATCAATTCATATTCTGAATGGAACTGCACTTGTGTCTTTGCTACAACCAGCACCAGAAACTTATGAATTATTTGATGATATAATACTTCTAACAGATGGACAAATTGTTTATCAAGGACCAAGAGAAAATGTACTTGAGTTTTTCGAATCAATGGGATTCAAGTGTCCTGAAAGAAAAGGAGTTGCTGATTTCTTACAAGAAGTGACATCAAGGAAAGATCAATGGCAATATTGGGCAAATAGAGATGAACCTTATAGTTTTGTTACTGTCAAGGATTTTGCTGAAGCCTTTCAGTTATTTCACATTGGACAAAAACTTGGAGATGAGTTAGCCAATCCTTTTGACAAGTCTAAAGGCCATACAAATATCTTGACCACAAAGAAATATGGTGTTAACAAGAAGGAGCTTTTGAAGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCGTTTGTCCATATATTCAAAGTCACTCAACTTATTTATCTAGCTATCATGACAACAACATTGTTCCTAAGAACAAAGATGCATAAGAATACTGTGGAAGATGGAGGAACATACATGGGAGCACTATTTTTCACAGTGACAGTAGCAATGTTCAATGGAATATCAGAGCTTAATATGACAATCATGAAACTTCCTGTCTTTTACAAGCAAAGGGACCTTCTTTTCTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAATAACTCTCATAGAAGTTTTCATTTGGGAAGCCATTACTTACTATGCCATCGGCTATGATCCAAATTTTGTAAGGCTTTTAAAACAGTATTTGATAATCTTTTGCATTAACCAAATGGCATCTTCACTATTTCGGTTGATGGCAGCCTTAGGAAGGGATGTTGTAGTTGCAAACACTGTTGGATCATTTGCATTGCTAGTAGTTCTGGTTTTAGGAGGATTTGTTATTTCAAGAGAGGATGTGCACAAATGGTTTCTGTGGGGTTACTGGTCCTCACCATTGATGTATGGACAGAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAAGGTTAATCAAAATTCCAATGAAACATTAGGAGTTTTGGTAATGAAAACTCGCGGTTTTTTCCCACAAGCTTACTGGTATTGGATTGGTGTAGGAGCATTGATTGGTTATGTTTTCCTATTTAACTTTCTGTTCACATTGGCTTTACAATATCTGAGTCCATTCAGAAAGGATCAAGCAGGACTATCTGAGGAGAAATTGCTGGAGAGAGATGCTTCAACAGCTGAAGAGTTTACTCAGTTACCGAATCGAAAAAGAATTTCAGAAACAAAGATTGTAGAAGAAGAACTTATGCCATCTAGATCTTTTTCTGCTAGAGTTGATAAGGATAAAACTAGTATAAGTGGAAGAAGAGGCATGGTTCTTCCTTTTCAACCTCTATCTATCACTTTCGATGAAATCAGATATGCAGTAGACATGCCACAGGAAATGAAAAGTCAAGGAGTTTTCGAGGACCGTCTTGAACTTTTGAAGGGTATTAGTGGTGCATTTAGGCCTGGAGTTTTAACAGCTCTTATGGGTGTAAGTGGTGCTGGAAAGACTACTTTAATGGATGTTTTAGCCGGAAGAAAAACAGGTGGATATATTGATGGGAACATCACAATATCTGGTTATCCAAAGAATCAAAAAACATTTGCTCGCATATCGGGATATTGCGAACAATTTGATATTCACTCACCTAATGTTACAGTTTATGAATCTTTGCTATATTCAGCATGGCTTCGGTTGCCACCTGACGTTGATAAAGCTACGAGAAAGATGTTTATTGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGAAGCACTTGTTGGATTGCCAGGCGAGAATGGACTTTCAACCGAACAACGTAAGAGACTTACTATCGCAGTTGAACTTGTAGCGAATCCATCGATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACGGTAAGGAACACCGTGGACACAGGACGTACCGTAGTTTGCACGATCCATCAGCCAAGTATTGACATATTTGACTCCTTCGACGAGCTTCTACTTATGAAATTGGGAGGTGAACAAATATATGCCGGTCCATTAGGCCGCCACTGTTCTCATTTGATTCATTATTTTGAGGCTATTGAAGGAGTTCCTAAAATCAAAGATGGTTATAATCCTGCAACATGGATGTTGGAAGTTACATCAGCGGGATCAGAAGCAAATCTTAAGGTCAACTTCACTAATGTATACAGAAACTCGGAACTATACCGGAGAAACAAACAATTGATCCAGGAATTAAGTATACCACCTCAAGATTCAAAGGATTTATACTTTGATACTCAATATACACAAACTATGTTAGCACAATGTAAAGCTTGTTTATGGAAACAACATTTATCATATTGGCGAAACACGTCGTATACAGCAGTTAGACTGTTATTTACAACACTAATAGCTATCTTGTTTGGAATCATATTTTGGAACATTGGATTAAAAAGGAGAAAGGAACAAGATCTTTTCAATGCAATGGGATCAATGTATGCTTCTGTTATCTTTATTGGAGTACAAAATGGTGCCTCTGTGCAGCCTGTAATAGCTGTTGAGAGAACAGTCTTTTATAGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCGTATGCAATAGCACAGGTGATTATAGAGCTTCCACACATATTGGTTCAGACACTGGTTTATGGTATTATTGTATATTCCATGATGGGATTGGAATGGACAACATCAAAATTCTTGTGGTATCTTTTCTTCATGTACTTCACTTTCTTGTACTATTGTTTCTATGGTATGATGACCATGGCTATTAGTCCCAACCCACATGTTGCTGCCATAATGTCTAGTGCATTCTATGCAATTTGGAGCCTTTTCTCTGGCTTTGTCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATATGTCCTGTTGCATGGACCTTGAATGGATTGGTGACATCTCAATATGGAGACAACATGGAAAAACTTGAGAATGGTCAAAGGATTGAAGAATTTGTGAGGAATTACTTTGGGTTTAAACAAGACTTCCTAGGAGTGGTTGCAATTGTTGTGGCTGGTTTCTCAGTCTTGTTTGCATTTATCTTCACCTTTAGTATCAAAGCATTCAACTTCCAAAAAAGATGA 4332 0.3728 MESNEVSRVDSLRRSTSSSNIWRNNSMDVFSKSEREDDEEALKWASIERLPTYLRIRRSILNNEEVDIKNLGLTERKVLLERLVKIAEDDNEKFLLKLKERMERVGVDIPTVEVRFDHVNVEAQVYVGGRALPSLLNFFVNVLEGFLNYLHIIPSPKKPLHILQNVSGIIKPQRMTLLLGPPGSGKTTLLLALAGKLANDLKKSGRVTYNGEGLEEFVPQRTSAYISQYDNHIGEMTVRETLAFSARCQGVGHNYDMLTELLRREKEAKIKPDPDVDAYMKAAALEGQQASVVTDYILKILGLEICADIMVGDEMIRGISGGQKKRVTTGEMLVGPIKVLFMDEISTGLDSSTTFQIISSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWANRDEPYSFVTVKDFAEAFQLFHIGQKLGDELANPFDKSKGHTNILTTKKYGVNKKELLKACASREFLLMKRNSFVHIFKVTQLIYLAIMTTTLFLRTKMHKNTVEDGGTYMGALFFTVTVAMFNGISELNMTIMKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLIEVFIWEAITYYAIGYDPNFVRLLKQYLIIFCINQMASSLFRLMAALGRDVVVANTVGSFALLVVLVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKVNQNSNETLGVLVMKTRGFFPQAYWYWIGVGALIGYVFLFNFLFTLALQYLSPFRKDQAGLSEEKLLERDASTAEEFTQLPNRKRISETKIVEEELMPSRSFSARVDKDKTSISGRRGMVLPFQPLSITFDEIRYAVDMPQEMKSQGVFEDRLELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQKTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPPDVDKATRKMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDSFDELLLMKLGGEQIYAGPLGRHCSHLIHYFEAIEGVPKIKDGYNPATWMLEVTSAGSEANLKVNFTNVYRNSELYRRNKQLIQELSIPPQDSKDLYFDTQYTQTMLAQCKACLWKQHLSYWRNTSYTAVRLLFTTLIAILFGIIFWNIGLKRRKEQDLFNAMGSMYASVIFIGVQNGASVQPVIAVERTVFYRERAAGMYSALPYAIAQVIIELPHILVQTLVYGIIVYSMMGLEWTTSKFLWYLFFMYFTFLYYCFYGMMTMAISPNPHVAAIMSSAFYAIWSLFSGFVIPLSRIPIWWKWYYWICPVAWTLNGLVTSQYGDNMEKLENGQRIEEFVRNYFGFKQDFLGVVAIVVAGFSVLFAFIFTFSIKAFNFQKR 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00727 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 420 IPR027417 -
Trre1g00727 1443 Gene3D - 862 1093 IPR027417 -
Trre1g00727 1443 Pfam ABC-2 type transporter 499 711 IPR013525 GO:0016020|GO:0140359
Trre1g00727 1443 Pfam ABC-2 type transporter 1172 1384 IPR013525 GO:0016020|GO:0140359
Trre1g00727 1443 Pfam ABC transporter 874 1026 IPR003439 GO:0005524
Trre1g00727 1443 Pfam ABC transporter 163 345 IPR003439 GO:0005524
Trre1g00727 1443 FunFam ABC transporter G family member 34 150 454 - -
Trre1g00727 1443 Gene3D - 150 452 IPR027417 -
Trre1g00727 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 869 1084 IPR027417 -
Trre1g00727 1443 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 9 1443 - -
Trre1g00727 1443 Pfam Plant PDR ABC transporter associated 716 777 IPR013581 -
Trre1g00727 1443 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 846 1098 IPR003439 GO:0005524
Trre1g00727 1443 Pfam ABC-transporter N-terminal 67 138 IPR029481 -
Trre1g00727 1443 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 147 420 IPR003439 GO:0005524
Trre1g00727 1443 SMART AAA_5 172 397 IPR003593 GO:0016887
Trre1g00727 1443 SMART AAA_5 883 1075 IPR003593 GO:0016887
Trre1g00727 1443 FunFam ABC transporter G family member 40 860 1090 - -
Trre1g00727 1443 CDD ABCG_PDR_domain2 843 1081 IPR034003 -
Trre1g00727 1443 Pfam ABC-2 type transporter 378 428 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00727 Trre-Chr1 5465535 5473658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00727 884 1058 Calmodulin-binding Proteins AT2G36910 26.630 1.49e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00727 K08711 - gmx:100810505 2547.7