Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00725 ATGTCAAGCTCTGCAATCATTGCGGCGCATTCTAGCTCTTGGGCTGCAGCACTCGTTAGGATCTCTCCATACACCTTTTCCGCAATCGGAATCGCCGTCTCTATCGGTGTTTCCGTTCTCGGCGCTGCTTGGGGAATTTACATCACCGGTAGTAGCTTGATCGGTGCTGCAATCAAAGCTCCCAGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCAGTTGCTATATATGGTGTTATTGTGGCTATTATCCTGCAGACAAAATTAGAAAGTGTTCCAAAAGCAAGTATCTATGAACCAGAATCTCTTAGAGCCGGATATGCAATCTTTGCCTCTGGACTTATTGTCGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTATCTGATGCTCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATTGAGATCTTCGGCAGCGCGCTTGGTCTATTCGGTGTTATTGTTGGAATTATCATGTCAGCTCAAGCCACATGGCCCACAAAATTTTAG 549 0.4426 MSSSAIIAAHSSSWAAALVRISPYTFSAIGIAVSIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKASIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00725 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 26 88 - -
Trre1g00725 182 Pfam ATP synthase subunit C 113 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Trre1g00725 182 Pfam ATP synthase subunit C 29 88 IPR002379 GO:0015078|GO:0033177|GO:1902600
Trre1g00725 182 SUPERFAMILY F1F0 ATP synthase subunit C 22 91 IPR035921 -
Trre1g00725 182 FunFam V-type proton ATPase proteolipid subunit 24 179 - -
Trre1g00725 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 42 66 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trre1g00725 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trre1g00725 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trre1g00725 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 68 92 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trre1g00725 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 10 176 - -
Trre1g00725 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 173 IPR035921 -
Trre1g00725 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 108 172 - -
Trre1g00725 182 Gene3D - 24 179 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00725 Trre-Chr1 5445989 5448843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00725 7 181 Primary Pumps ATPases(2) AT2G25610 92.000 1.50e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00725 K03661 - gmx:100778175 310.071